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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339486 (69 seq.)
>W1710860031
LMCO01000001
Alphaproteobacteria
Ensifer sp. Root31 [LMCO]
128551
128477
-
Gly
CCC
[ENA]
¡û
>W1710861803
LMDX01000001
Alphaproteobacteria
Ensifer sp. Root127 [LMDX]
946918
946844
-
Gly
CCC
[ENA]
¡û
>W1710862260
LMEG01000012
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
213963
214037
+
Gly
CCC
[ENA]
¡û
>W1710862648
LMEN01000039
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
208760
208686
-
Gly
CCC
[ENA]
¡û
>W1710862968
LMES01000038
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
208776
208702
-
Gly
CCC
[ENA]
¡û
>W1710864710
LMGC01000012
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
467206
467280
+
Gly
CCC
[ENA]
¡û
>W1710867532
LMII01000042
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
677985
677911
-
Gly
CCC
[ENA]
¡û
>W1710868936
LMJM01000052
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
207824
207750
-
Gly
CCC
[ENA]
¡û
>W1710878691
LMRD01000013
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
14018
13944
-
Gly
CCC
[ENA]
¡û
>W1711116169
LUAV01000002
Alphaproteobacteria
Ensifer aridi [LUAV]
486372
486446
+
Gly
CCC
[ENA]
¡û
>W1711338060
MBST01000013
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
90505
90431
-
Gly
CCC
[ENA]
¡û
>W1711679622
MRVD01000001
Alphaproteobacteria
Ensifer adhaerens [MRVD]
374969
375043
+
Gly
CCC
[ENA]
¡û
>C171020978
CP013107
Alphaproteobacteria
Sinorhizobium americanum CFNEI 73 [CP013107]
521690
521764
+
Gly
CCC
-
¡û
>C171117305
CP021219
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CP021219]
628465
628391
-
Gly
CCC
-
¡û
>C171123411
CP021797
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 [CP021797]
1075677
1075603
-
Gly
CCC
-
¡û
>C171123553
CP021808
Alphaproteobacteria
Sinorhizobium meliloti Rm41 [CP021808]
2985450
2985524
+
Gly
CCC
-
¡û
>C171123634
CP021818
Alphaproteobacteria
Sinorhizobium meliloti M162 [CP021818]
599967
600041
+
Gly
CCC
-
¡û
>W131162698
AQZC01000015
Alphaproteobacteria
Sinorhizobium medicae WSM1115 [AQZC]
107393
107319
-
Gly
CCC
[ENA]
¡û
>W131213923
ATTK01000002
Alphaproteobacteria
Sinorhizobium meliloti MVII-I [ATTK]
115370
115296
-
Gly
CCC
[ENA]
¡û
>W131220122
ATZC01000040
Alphaproteobacteria
Sinorhizobium meliloti GVPV12 [ATZC]
53213
53139
-
Gly
CCC
[ENA]
¡û
>C022798
AL591688
Alphaproteobacteria
Sinorhizobium meliloti 1021 [AL591688]
581412
581486
+
Gly
CCC
[Ensembl]
¡û
>W141216448
AZUW01000028
Alphaproteobacteria
Ensifer sp. WSM1721 [AZUW]
3884
3958
+
Gly
CCC
[ENA]
¡û
>WENV183742418
PJUH01029529
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
302
228
-
Gly
CCC
[ENA]
¢þ
>C181038010
CP019584
Alphaproteobacteria
Sinorhizobium meliloti [CP019584]
563431
563505
+
Gly
CCC
-
¡û
>W141726256
JNAE01000126
Alphaproteobacteria
Ensifer adhaerens [JNAE]
137396
137322
-
Gly
CCC
[ENA]
¡û
>W1910856404
NBUB01000030
Alphaproteobacteria
Sinorhizobium medicae Str17 [NBUB]
3526
3600
+
Gly
CCC
[ENA]
¡û
>W1910856482
NBUC01000181
Alphaproteobacteria
Sinorhizobium medicae Str16 [NBUC]
226664
226590
-
Gly
CCC
[ENA]
¡û
>W1910856773
NBUI01000144
Alphaproteobacteria
Sinorhizobium medicae Str10 [NBUI]
251578
251504
-
Gly
CCC
[ENA]
¡û
>W1910857055
NBUP01000061
Alphaproteobacteria
Sinorhizobium medicae Str3 [NBUP]
66843
66769
-
Gly
CCC
[ENA]
¡û
>W1910891704
NEXT01000002
Alphaproteobacteria
Sinorhizobium sp. LM21 [NEXT]
468354
468428
+
Gly
CCC
[ENA]
¡û
>W1911614462
POVM01000001
Alphaproteobacteria
Sinorhizobium meliloti 320 [POVM]
206925
206999
+
Gly
CCC
[ENA]
¡û
>W1810192925
PKMZ01000012
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
14372
14298
-
Gly
CCC
[ENA]
¡û
>W1810196998
PNFP01000001
Alphaproteobacteria
Ensifer adhaerens ST2 [PNFP]
475814
475888
+
Gly
CCC
[ENA]
¡û
>W1810368525
PVZR01000001
Alphaproteobacteria
Ensifer sp. NM-2 [PVZR]
455255
455329
+
Gly
CCC
[ENA]
¡û
>W1810671964
QJTB01000001
Alphaproteobacteria
Ensifer adhaerens WJB133 25_10 [QJTB]
935096
935022
-
Gly
CCC
[ENA]
¡û
>W1810696383
QLTH01000001
Alphaproteobacteria
Ensifer adhaerens AG1206 [QLTH]
618188
618114
-
Gly
CCC
[ENA]
¡û
>SRA1015334
SRR023846.21787
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
16
90
+
Gly
CCC
[SRA]
>C11120818
CP002740
Alphaproteobacteria
Sinorhizobium meliloti BL225C [CP002740]
161522
161596
+
Gly
CCC
[Ensembl]
¡û
>W1511403332
JTLA01000105
Alphaproteobacteria
Ensifer sp. ZNC0028 [JTLA]
17825
17899
+
Gly
CCC
[ENA]
¡û
>W1511555752
JZXD01000002
Alphaproteobacteria
Sinorhizobium meliloti L5-30 [JZXD]
207703
207777
+
Gly
CCC
[ENA]
¡û
>W1511694119
LGAP01000004
Alphaproteobacteria
Ensifer adhaerens SD006 [LGAP]
83296
83222
-
Gly
CCC
[ENA]
¡û
>C161092065
CP015880
Alphaproteobacteria
Ensifer adhaerens Casida A [CP015880]
166271
166345
+
Gly
CCC
[Ensembl]
¡û
>W121066150
AJQP01000044
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
21738
21664
-
Gly
CCC
[ENA]
¡û
>W121066258
AJQR01000171
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
213
287
+
Gly
CCC
[ENA]
¡û
>W121066295
AJQS01000043
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
46241
46167
-
Gly
CCC
[ENA]
¡û
>W121103691
AKZT01000360
Alphaproteobacteria
Sinorhizobium meliloti C0431A [AKZT]
27898
27972
+
Gly
CCC
[ENA]
¡û
>W121103770
AKZV01000228
Alphaproteobacteria
Sinorhizobium meliloti AK11 [AKZV]
27986
28060
+
Gly
CCC
[ENA]
¡û
>W1610024623
AUSY01000044
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
137376
137302
-
Gly
CCC
[ENA]
¡û
>W1610024750
AUTB01000052
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
112991
113065
+
Gly
CCC
[ENA]
¡û
>W1610056459
BBWH01000021
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
79418
79492
+
Gly
CCC
[ENA]
¡û
>W1610056607
BBWK01000015
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15397
15471
+
Gly
CCC
[ENA]
¡û
>W1610722377
LMCO01000001
Alphaproteobacteria
Ensifer sp. Root31 [LMCO]
128551
128477
-
Gly
CCC
[ENA]
¡û
>W1610724149
LMDX01000001
Alphaproteobacteria
Ensifer sp. Root127 [LMDX]
946918
946844
-
Gly
CCC
[ENA]
¡û
>W1610724606
LMEG01000012
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
213963
214037
+
Gly
CCC
[ENA]
¡û
>W1610724994
LMEN01000039
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
208760
208686
-
Gly
CCC
[ENA]
¡û
>W1610725314
LMES01000038
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
208776
208702
-
Gly
CCC
[ENA]
¡û
>W1610727056
LMGC01000012
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
467206
467280
+
Gly
CCC
[ENA]
¡û
>W1610729878
LMII01000042
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
677985
677911
-
Gly
CCC
[ENA]
¡û
>W1610731282
LMJM01000052
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
207824
207750
-
Gly
CCC
[ENA]
¡û
>W1610741037
LMRD01000013
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
14018
13944
-
Gly
CCC
[ENA]
¡û
>W1611066988
MBST01000013
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
90505
90431
-
Gly
CCC
[ENA]
¡û
>W1710021064
AUSY01000044
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
137376
137302
-
Gly
CCC
[ENA]
¡û
>W1710021191
AUTB01000052
Alphaproteobacteria
Sinorhizobium sp. GL2 [AUTB]
112991
113065
+
Gly
CCC
[ENA]
¡û
>W1710053158
BBWH01000021
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
79418
79492
+
Gly
CCC
[ENA]
¡û
>W1710053306
BBWK01000015
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
15397
15471
+
Gly
CCC
[ENA]
¡û
>W1710521792
FNGR01000003
Alphaproteobacteria
Ensifer sp. YR511 [FNGR]
385107
385033
-
Gly
CCC
[ENA]
¡û
>W1710530176
FNOO01000002
Alphaproteobacteria
Sinorhizobium meliloti [FNOO]
260060
260134
+
Gly
CCC
[ENA]
¡û
>W1710561940
FOON01000001
Alphaproteobacteria
Ensifer sp. OV372 [FOON]
210215
210289
+
Gly
CCC
[ENA]
¡û
>W1710698070
LAZS01000006
Alphaproteobacteria
Ensifer adhaerens [LAZS]
608071
607997
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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