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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339488 (102 seq.)
>W1710784112
LJGS01000035
Actinomycetota
Streptomyces abyssalis [LJGS]
180787
180860
+
Met
CAT
[ENA]
¡û
>W1710784306
LJGV01000022
Actinomycetota
Streptomyces qinglanensis [LJGV]
5587805
5587732
-
Met
CAT
[ENA]
¡û
>W1710784412
LJGX01000784
Actinomycetota
Streptomyces nanshensis [LJGX]
4743
4816
+
Met
CAT
[ENA]
¡û
>W131166391
ARCK01000053
Actinomycetota
Wenjunlia vitaminophila DSM 41686 [ARCK]
3329
3405
+
Met
CAT
[ENA]
¡û
>W1711252256
LYOT01000051
Actinomycetota
Streptomyces albus rangoonensis [LYOT]
24547
24474
-
Met
CAT
[ENA]
¡û
>W1711491748
MKJV01000075
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
106750
106675
-
Met
CAT
[ENA]
¡û
>W1711511143
MLCF01000004
Actinomycetota
Mangrovactinospora gilvigrisea gilvigriseus [MLCF]
3136
3212
+
Met
CAT
[ENA]
¡û
>W1711694656
MSIE01000029
Actinomycetota
Actinophytocola xanthii 11-183 [MSIE]
118418
118345
-
Met
CAT
[ENA]
¡û
>W1711738907
MUBL01000232
Actinomycetota
Streptomyces cacaoi subsp. cacaoi [MUBL]
41831
41758
-
Met
CAT
[ENA]
¡û
>W1711790868
MWIH01000006
Actinomycetota
Saccharomonospora piscinae LRS4.154 [MWIH]
562804
562877
+
Met
CAT
[ENA]
¡û
>W131177859
ARLC01000025
Actinomycetota
Streptomyces sulphureus DSM 40104 [ARLC]
321132
321059
-
Met
CAT
[ENA]
¡û
>W131227007
AUEV01000001
Actinomycetota
Streptomyces sp. TAA486 [AUEV]
27880
27953
+
Met
CAT
[ENA]
¡û
>W131234119
AUKN01000016
Actinomycetota
Streptomyces sp. CNT318 [AUKN]
136719
136792
+
Met
CAT
[ENA]
¡û
>W131234292
AUKQ01000015
Actinomycetota
Streptomyces sp. CNH287 [AUKQ]
6361
6434
+
Met
CAT
[ENA]
¡û
>W131170943
ARFV01000082
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
211972
211899
-
Met
CAT
[ENA]
¡û
>W131158743
AQUL01000001
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
5519835
5519908
+
Met
CAT
[ENA]
¡û
>W131228211
AUFT01000006
Actinomycetota
Nakamurella lactea DSM 19367 [AUFT]
203012
202937
-
Met
CAT
[ENA]
¡û
>WENV181155529
OEID01223221
[OEID] soil metagenome; soil
70
146
+
Met
CAT
[ENA]
¢þ
>WENV181163944
OEIQ01365006
[OEIQ] soil metagenome; soil
132
58
-
Met
CAT
[ENA]
¢þ
>WENV181401775
OFTX01005754
[OFTX] sludge metagenome; sludge
2018
2092
+
Met
CAT
[ENA]
¢þ
>W141151762
AXBH01000004
Actinomycetota
Amycolatopsis thermoflava N1165 [AXBH]
61301
61228
-
Met
CAT
[ENA]
¡û
>WENV181609356
OGLN01020187
[OGLN] metagenome; Human gut stool
353
278
-
Met
CAT
[ENA]
¢þ
>WENV181641896
OGNF01030985
[OGNF] metagenome; Human gut stool
1048
1123
+
Met
CAT
[ENA]
¢þ
>W141185568
AYJW01000001
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
41136
41061
-
Met
CAT
[ENA]
¡û
>W141215938
AZUM01000004
Actinomycetota
Saccharomonospora piscinae CNQ490 [AZUM]
164771
164698
-
Met
CAT
[ENA]
¡û
>C181019501
CP016353
Actinomycetota
Prauserella marina DSM 45268 [CP016353]
600328
600401
+
Met
CAT
-
¡û
>C181049439
CP021118
Actinomycetota
Streptomyces sp. CLI2509 CLI2905 [CP021118]
2897616
2897543
-
Met
CAT
-
¡û
>W141563916
JIAI01000015
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
126365
126290
-
Met
CAT
[ENA]
¡û
>W141754561
JNVU01000014
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
159967
159892
-
Met
CAT
[ENA]
¡û
>W141755745
JNWT01000012
Actinomycetota
Streptomyces graminis [JNWT]
60655
60582
-
Met
CAT
[ENA]
¡û
>W141757777
JNYD01000012
Actinomycetota
Pseudonocardia autotrophica [JNYD]
33571
33644
+
Met
CAT
[ENA]
¡û
>W141757999
JNYI01000091
Actinomycetota
Goodfellowiella coeruleoviolacea [JNYI]
1344
1417
+
Met
CAT
[ENA]
¡û
>W141758368
JNYO01000004
Actinomycetota
Saccharothrix syringae [JNYO]
593201
593274
+
Met
CAT
[ENA]
¡û
>W141758806
JNYW01001571
Actinomycetota
Saccharopolyspora phatthalungensis [JNYW]
897
822
-
Met
CAT
[ENA]
¡û
>W141765966
JODR01000016
Actinomycetota
Streptomyces albus subsp. albus [JODR]
139781
139854
+
Met
CAT
[ENA]
¡û
>W141766460
JODZ01000010
Actinomycetota
Streptomyces albus subsp. albus [JODZ]
113460
113533
+
Met
CAT
[ENA]
¡û
>W141769935
JOGD01000029
Actinomycetota
Streptomyces sp. NRRL S-1868 [JOGD]
15355
15428
+
Met
CAT
[ENA]
¡û
>W141770537
JOGO01000020
Actinomycetota
Streptomyces sp. NRRL F-5630 [JOGO]
88125
88052
-
Met
CAT
[ENA]
¡û
>W141772187
JOHQ01000040
Actinomycetota
Streptomyces sp. NRRL F-5917 [JOHQ]
6971
7044
+
Met
CAT
[ENA]
¡û
>W141772345
JOHT01000007
Actinomycetota
Streptomyces sp. NRRL F-5053 [JOHT]
47983
48056
+
Met
CAT
[ENA]
¡û
>W141820077
JQMQ01000005
Actinomycetota
Phaeacidiphilus oryzae TH49 [JQMQ]
4230320
4230395
+
Met
CAT
[ENA]
¡û
>W1910038421
BEGX01000052
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
509740
509665
-
Met
CAT
[ENA]
¡û
>W1910181943
BJMM01000004
Actinomycetota
Streptomyces cacaoi subsp. cacaoi NBRC 12748 [BJMM]
176261
176334
+
Met
CAT
[ENA]
¡û
>W1910572942
JNNY01000116
Actinomycetota
Streptomyces qinglanensis 172205 [JNNY]
30771
30698
-
Met
CAT
[ENA]
¡û
>W1910657682
MASV01000022
Actinomycetota
Prauserella coralliicola DSM 45821 [MASV]
82725
82798
+
Met
CAT
[ENA]
¡û
>W1910994852
NKYF01000008
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
151771
151846
+
Met
CAT
[ENA]
¡û
>W1911075166
NMUK01000020
Actinomycetota
Amycolatopsis sp. KNN50.9b [NMUK]
45965
46038
+
Met
CAT
[ENA]
¡û
>W1911245720
NSKH01000018
Actinomycetota
Streptomyces sp. ICBB 8177 [NSKH]
1724760
1724833
+
Met
CAT
[ENA]
¡û
>W1911572276
PDBV01000001
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 DSM 40517 [PDBV]
8071505
8071430
-
Met
CAT
[ENA]
¡û
>W1911813410
QZEZ01000009
Actinomycetota
Vallicoccus soli YIM 75000 [QZEZ]
69759
69834
+
Met
CAT
[ENA]
¡û
>W1911814715
QZFV01000124
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
4280
4353
+
Met
CAT
[ENA]
¡û
>W1810058395
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
1601650
1601577
-
Met
CAT
[ENA]
¡û
>W1810173487
PJNB01000001
Actinomycetota
Saccharopolyspora spinosa DSM 44228 [PJNB]
435829
435754
-
Met
CAT
[ENA]
¡û
>W1810176411
PJPW02000178
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
24133
24058
-
Met
CAT
[ENA]
¡û
>W1810195849
PKSK01001744
Actinomycetota
Streptomyces sp. DJ [PKSK]
1447
1371
-
Met
CAT
[ENA]
¡û
>W1810254762
PQHW01000014
Actinomycetota
Amycolatopsis thermalba NRRL B-24845 [PQHW]
20517
20590
+
Met
CAT
[ENA]
¡û
>W1810254822
PQHX01000018
Actinomycetota
Amycolatopsis thermalba 50.9b [PQHX]
70929
70856
-
Met
CAT
[ENA]
¡û
>W1810254860
PQHY01000014
Actinomycetota
Amycolatopsis ruanii 49.3e [PQHY]
73960
73887
-
Met
CAT
[ENA]
¡û
>W1810573628
QEKW01000005
Actinomycetota
Actinomycetospora cinnamomea DSM 45771 [QEKW]
280981
281056
+
Met
CAT
[ENA]
¡û
>W1810608709
QGTN01000002
Actinomycetota
Prauserella marina DSM 45268 [QGTN]
1015024
1015097
+
Met
CAT
[ENA]
¡û
>W1810694234
QLLX01000001
Actinomycetota
Streptomyces sp. Amel2xB2 [QLLX]
838356
838283
-
Met
CAT
[ENA]
¡û
>W1810735418
QOIM01000045
Actinomycetota
Streptomyces reniochalinae LHW50302 [QOIM]
145082
145155
+
Met
CAT
[ENA]
¡û
>W1810735459
QOIN01000047
Actinomycetota
Streptomyces diacarni philanthi LHW51701 [QOIN]
395958
395885
-
Met
CAT
[ENA]
¡û
>C151044204
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
625983
626056
+
Met
CAT
[Ensembl]
¡û
>W1510014799
BBQG01000012
Actinomycetota
Streptomyces albus NBRC 13014 [BBQG]
140676
140749
+
Met
CAT
[ENA]
¡û
>W10120354
ADXA01000004
Actinomycetota
Streptomyces sp. SA3_actG [ADXA]
32322
32395
+
Met
CAT
[ENA]
¡û
>W10120441
ADXB01000308
Actinomycetota
Streptomyces sp. SA3_actF [ADXB]
1163
1236
+
Met
CAT
[ENA]
¡û
>C11117088
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
5831024
5830949
-
Met
CAT
[Ensembl]
¡û
>C11119721
FQ859185
Actinomycetota
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488 [FQ859185]
3767270
3767343
+
Met
CAT
[Ensembl]
¡û
>W11126963
ADXA01000004
Actinomycetota
Streptomyces sp. SA3_actG [ADXA]
32322
32395
+
Met
CAT
[ENA]
¡û
>W11127050
ADXB01000308
Actinomycetota
Streptomyces sp. SA3_actF [ADXB]
1163
1236
+
Met
CAT
[ENA]
¡û
>W11152496
AEYC01000092
Actinomycetota
Saccharopolyspora spinosa NRRL 18395 [AEYC]
42556
42481
-
Met
CAT
[ENA]
¡û
>W11162974
AFHJ01000002
Actinomycetota
Streptomyces sp. Tu6071 [AFHJ]
968225
968152
-
Met
CAT
[ENA]
¡û
>W11176360
AFWY01000010
Actinomycetota
Amycolatopsis sp. ATCC 39116 [AFWY]
296517
296444
-
Met
CAT
[ENA]
¡û
>C121008918
CP003219
Actinomycetota
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488 [CP003219]
3767077
3767150
+
Met
CAT
-
¡û
>W121067760
AJTQ01000297
Actinomycetota
Streptomyces xiaopingdaonensis L180 [AJTQ]
2365
2438
+
Met
CAT
[ENA]
¡û
>W121104646
ALAP01000008
Actinomycetota
Streptomyces sp. AA1529 [ALAP]
130034
130107
+
Met
CAT
[ENA]
¡û
>W121036240
AHLX01000001
Actinomycetota
Saccharomonospora marina XMU15 [AHLX]
677367
677440
+
Met
CAT
[ENA]
¡û
>W1610050377
BBFU01000476
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
369
444
+
Met
CAT
[ENA]
¡û
>W1610081255
BDDI01000023
Actinomycetota
Hoyosella altamirensis [BDDI]
8309
8236
-
Met
CAT
[ENA]
¡û
>W1610551397
JYIJ01000017
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
716294
716221
-
Met
CAT
[ENA]
¡û
>W1610615023
LGKH01001779
Actinomycetota
Streptomyces sp. NRRL F-6602 [LGKH]
153652
153725
+
Met
CAT
[ENA]
¡û
>W1610632518
LIPX01000005
Actinomycetota
Streptomyces sp. WMMB 322 [LIPX]
382324
382251
-
Met
CAT
[ENA]
¡û
>W1610633254
LIQO01000562
Actinomycetota
Streptomyces albus flocculus [LIQO]
1147
1220
+
Met
CAT
[ENA]
¡û
>W1611017044
LYOT01000051
Actinomycetota
Streptomyces albus rangoonensis [LYOT]
24547
24474
-
Met
CAT
[ENA]
¡û
>W1710046776
BBFU01000476
Actinomycetota
Pseudonocardia tetrahydrofuranoxydans JCM 14745 [BBFU]
369
444
+
Met
CAT
[ENA]
¡û
>W1710079906
BDDI01000023
Actinomycetota
Hoyosella altamirensis [BDDI]
8309
8236
-
Met
CAT
[ENA]
¡û
>W1710502022
FMCE01000071
Actinomycetota
Streptomyces sp. TverLS-915 [FMCE]
51657
51584
-
Met
CAT
[ENA]
¡û
>W1710502442
FMCL01000035
Actinomycetota
Streptomyces sp. DfronAA-171 [FMCL]
4783
4856
+
Met
CAT
[ENA]
¡û
>W1710502567
FMCN01000673
Actinomycetota
Streptomyces sp. SolWspMP-sol7th [FMCN]
106
179
+
Met
CAT
[ENA]
¡û
>W1710503146
FMCY01000133
Actinomycetota
Streptomyces sp. LcepLS [FMCY]
114399
114326
-
Met
CAT
[ENA]
¡û
>W1710503772
FMHJ01000019
Actinomycetota
Streptomyces sp. WMMB 714 [FMHJ]
5879
5952
+
Met
CAT
[ENA]
¡û
>W1710512144
FMZE01000003
Actinomycetota
Prauserella marina [FMZE]
550696
550769
+
Met
CAT
[ENA]
¡û
>W1710513231
FMZZ01000011
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
128102
128175
+
Met
CAT
[ENA]
¡û
>W1710529977
FNOK01000011
Actinomycetota
Saccharopolyspora shandongensis [FNOK]
194259
194184
-
Met
CAT
[ENA]
¡û
>W1710552069
FOGO01000020
Actinomycetota
Streptomyces qinglanensis [FOGO]
32013
31940
-
Met
CAT
[ENA]
¡û
>W1710569682
FOUP01000008
Actinomycetota
Saccharopolyspora antimicrobica [FOUP]
260064
259989
-
Met
CAT
[ENA]
¡û
>W1710576264
FOZX01000001
Actinomycetota
Saccharopolyspora flava [FOZX]
1300878
1300803
-
Met
CAT
[ENA]
¡û
>W1710661670
JYIJ01000017
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
716294
716221
-
Met
CAT
[ENA]
¡û
>W1710736269
LGKH01001779
Actinomycetota
Streptomyces sp. NRRL F-6602 [LGKH]
153652
153725
+
Met
CAT
[ENA]
¡û
>W1710766904
LIPX01000005
Actinomycetota
Streptomyces sp. WMMB 322 [LIPX]
382324
382251
-
Met
CAT
[ENA]
¡û
>W1710767686
LIQO01000562
Actinomycetota
Streptomyces albus flocculus [LIQO]
1147
1220
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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