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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339514 (72 seq.)
>W1710867405
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
1130868
1130942
+
Thr
GGT
[ENA]
¡û
>W1710872672
LMME01000001
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
129792
129866
+
Thr
GGT
[ENA]
¡û
>W1710872761
LMMG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
144011
144085
+
Thr
GGT
[ENA]
¡û
>W1710872873
LMMI01000012
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
2866
2792
-
Thr
GGT
[ENA]
¡û
>W1710872983
LMMK01000052
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
136382
136308
-
Thr
GGT
[ENA]
¡û
>W1710873004
LMML01000023
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
106901
106975
+
Thr
GGT
[ENA]
¡û
>W1710873171
LMMP01000002
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
148412
148486
+
Thr
GGT
[ENA]
¡û
>W1710873362
LMMS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
289801
289727
-
Thr
GGT
[ENA]
¡û
>W1710873448
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
550702
550628
-
Thr
GGT
[ENA]
¡û
>W1710873560
LMMW01000024
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
11841
11767
-
Thr
GGT
[ENA]
¡û
>W1710873578
LMMX01000001
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
624505
624579
+
Thr
GGT
[ENA]
¡û
>W1710873688
LMMZ01000018
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
11076
11002
-
Thr
GGT
[ENA]
¡û
>W1710873795
LMNB01000023
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
194609
194683
+
Thr
GGT
[ENA]
¡û
>W1710873868
LMND01000003
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
6782
6708
-
Thr
GGT
[ENA]
¡û
>W1710873947
LMNE01000067
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
138217
138143
-
Thr
GGT
[ENA]
¡û
>W1710873997
LMNG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
188677
188603
-
Thr
GGT
[ENA]
¡û
>W1710874162
LMNJ01000020
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
5195
5121
-
Thr
GGT
[ENA]
¡û
>W1710874242
LMNL01000003
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
99493
99419
-
Thr
GGT
[ENA]
¡û
>W1710874675
LMNU01000046
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
197762
197836
+
Thr
GGT
[ENA]
¡û
>W1710877775
LMQK01000001
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
706381
706307
-
Thr
GGT
[ENA]
¡û
>W1710878543
LMRA01000044
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
136873
136947
+
Thr
GGT
[ENA]
¡û
>W1710878635
LMRC01000032
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
423
349
-
Thr
GGT
[ENA]
¡û
>W1710878693
LMRE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
585057
585131
+
Thr
GGT
[ENA]
¡û
>W1710879176
LMRM01000003
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
136403
136329
-
Thr
GGT
[ENA]
¡û
>W1710912523
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
27589
27663
+
Thr
GGT
[ENA]
¡û
>W1710912627
LNRT01000012
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
156401
156327
-
Thr
GGT
[ENA]
¡û
>W1710913015
LNSC01000025
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
12823
12749
-
Thr
GGT
[ENA]
¡û
>W131159763
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
3921906
3921832
-
Thr
GGT
[ENA]
¡û
>W131166780
ARCS01000002
Alphaproteobacteria
Methylobacterium sp. 77 [ARCS]
2974600
2974526
-
Thr
GGT
[ENA]
¡û
>C171094580
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
1175257
1175183
-
Thr
GGT
-
¡û
>C171128413
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
1698731
1698805
+
Thr
GGT
-
¡û
>C019751
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1686704
1686630
-
Thr
GGT
[Ensembl]
¡û
>W141277758
JAEV01000005
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
168122
168196
+
Thr
GGT
[ENA]
¡û
>WENV170709727
LNFM01000633
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
66433
66507
+
Thr
GGT
[ENA]
¢þ
>C191000586
AP017898
Alphaproteobacteria
Sphingopyxis sp. FD7 [AP017898]
1589921
1589847
-
Thr
GGT
-
¡û
>C191163797
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
2122123
2122197
+
Thr
GGT
-
¡û
>SRA1000221
SRR001037.119182
Marine Viruses from Arctic Ocean (SRP000129)
79
5
-
Thr
GGT
[SRA]
>W1810057211
PDHT01000023
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
3418
3344
-
Thr
GGT
[ENA]
¡û
>W1810487220
QAYK01000011
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
137797
137723
-
Thr
GGT
[ENA]
¡û
>W1810672716
QJTP01000011
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
137797
137723
-
Thr
GGT
[ENA]
¡û
>SRA1014110
SRR023845.3799
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
59
133
+
Thr
GGT
[SRA]
>SRA1015170
SRR023845.486421
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
68
142
+
Thr
GGT
[SRA]
>C151044404
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
2266994
2266920
-
Thr
GGT
[Ensembl]
¡û
>W1610729751
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
1130868
1130942
+
Thr
GGT
[ENA]
¡û
>W1610735018
LMME01000001
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
129792
129866
+
Thr
GGT
[ENA]
¡û
>W1610735107
LMMG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
144011
144085
+
Thr
GGT
[ENA]
¡û
>W1610735219
LMMI01000012
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
2866
2792
-
Thr
GGT
[ENA]
¡û
>W1610735329
LMMK01000052
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
136382
136308
-
Thr
GGT
[ENA]
¡û
>W1610735350
LMML01000023
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
106901
106975
+
Thr
GGT
[ENA]
¡û
>W1610735517
LMMP01000002
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
148412
148486
+
Thr
GGT
[ENA]
¡û
>W1610735708
LMMS01000023
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
289801
289727
-
Thr
GGT
[ENA]
¡û
>W1610735794
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
550702
550628
-
Thr
GGT
[ENA]
¡û
>W1610735906
LMMW01000024
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
11841
11767
-
Thr
GGT
[ENA]
¡û
>W1610735924
LMMX01000001
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
624505
624579
+
Thr
GGT
[ENA]
¡û
>W1610736034
LMMZ01000018
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
11076
11002
-
Thr
GGT
[ENA]
¡û
>W1610736141
LMNB01000023
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
194609
194683
+
Thr
GGT
[ENA]
¡û
>W1610736214
LMND01000003
Alphaproteobacteria
Methylobacterium sp. Leaf108 [LMND]
6782
6708
-
Thr
GGT
[ENA]
¡û
>W1610736293
LMNE01000067
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
138217
138143
-
Thr
GGT
[ENA]
¡û
>W1610736343
LMNG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
188677
188603
-
Thr
GGT
[ENA]
¡û
>W1610736508
LMNJ01000020
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
5195
5121
-
Thr
GGT
[ENA]
¡û
>W1610736588
LMNL01000003
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
99493
99419
-
Thr
GGT
[ENA]
¡û
>W1610737021
LMNU01000046
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
197762
197836
+
Thr
GGT
[ENA]
¡û
>W1610740121
LMQK01000001
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
706381
706307
-
Thr
GGT
[ENA]
¡û
>W1610740889
LMRA01000044
Alphaproteobacteria
Methylobacterium sp. Leaf465 [LMRA]
136873
136947
+
Thr
GGT
[ENA]
¡û
>W1610740981
LMRC01000032
Alphaproteobacteria
Methylobacterium sp. Leaf466 [LMRC]
423
349
-
Thr
GGT
[ENA]
¡û
>W1610741039
LMRE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf469 [LMRE]
585057
585131
+
Thr
GGT
[ENA]
¡û
>W1610741522
LMRM01000003
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
136403
136329
-
Thr
GGT
[ENA]
¡û
>W1610770882
LNRR01000006
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
27589
27663
+
Thr
GGT
[ENA]
¡û
>W1610770986
LNRT01000012
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
156401
156327
-
Thr
GGT
[ENA]
¡û
>W1610771374
LNSC01000025
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
12823
12749
-
Thr
GGT
[ENA]
¡û
>W1710540043
FNWK01000002
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
51337
51411
+
Thr
GGT
[ENA]
¡û
>W1710563198
FOPM01000026
Alphaproteobacteria
Methylobacterium gossipiicola [FOPM]
32290
32364
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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