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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339533 (95 seq.)
>W1710859016
LMBV01000003
Bacillota
Peribacillus muralis [LMBV]
163488
163414
-
Val
GAC
[ENA]
¡û
>W1710878997
LMRJ01000045
Bacillota
Bacillus sp. Leaf13 [LMRJ]
232029
232100
+
Val
GAC
[ENA]
¡û
>W1710881311
LMSZ01000035
Bacillota
Bacillus sp. Soil745 [LMSZ]
35794
35868
+
Val
GAC
[ENA]
¡û
>W1710881379
LMTA01000029
Bacillota
Bacillus sp. Soil768D1 [LMTA]
32563
32634
+
Val
GAC
[ENA]
¡û
>W1710905487
LNNH01000035
Bacillota
Peribacillus simplex [LNNH]
29962
30036
+
Val
GAC
[ENA]
¡û
>W1711101904
LTNF01000169
Bacillota
Bacillus sp. HMSC76G11 [LTNF]
106366
106437
+
Val
GAC
[ENA]
¡û
>W1711130373
LUUR01000001
Bacillota
Neobacillus novalis [LUUR]
918988
919059
+
Val
GAC
[ENA]
¡û
>W1711130532
LUUS01000003
Bacillota
Peribacillus frigoritolerans [LUUS]
1275472
1275398
-
Val
GAC
[ENA]
¡û
>W1711182095
LWJH01000004
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
3486460
3486386
-
Val
GAC
[ENA]
¡û
>W1711182233
LWJJ01000088
Bacillota
Peribacillus simplex [LWJJ]
93830
93756
-
Val
GAC
[ENA]
¡û
>W1711720380
MTIS01000005
Bacillota
Litchfieldia alkalitelluris [MTIS]
2578495
2578421
-
Val
GAC
[ENA]
¡û
>C171056627
CP017080
Bacillota
Peribacillus muralis G25-68 [CP017080]
1314485
1314559
+
Val
GAC
-
¡û
>WENV180101258
OAOU01013766
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
266
195
-
Val
GAC
[ENA]
¢þ
>W141263818
CCDN010000005
Bacillota
Rossellomorea vietnamensis [CCDN]
165800
165871
+
Val
GAC
[ENA]
¡û
>W09119860
ACED01000012
Bacillota
Geobacillus sp. Y412MC61 [ACED]
97533
97604
+
Val
GAC
[ENA]
¡û
>W09132051
ACNM01000009
Bacillota
Geobacillus sp. Y412MC52 [ACNM]
96854
96925
+
Val
GAC
[ENA]
¡û
>C181027130
CP017692
Bacillota
Geobacillus lituanicus N-3 [CP017692]
2916495
2916566
+
Val
GAC
-
¡û
>C181027524
CP017704
Bacillota
Peribacillus simplex NBRC 15720 = DSM 1321 [CP017704]
1268678
1268607
-
Val
GAC
-
¡û
>C181194417
CP030926
Bacillota
Peribacillus butanolivorans PHB-7a [CP030926]
3903768
3903839
+
Val
GAC
-
¡û
>W141520482
JGVU02000001
Bacillota
Metabacillus indicus LMG 22858 [JGVU]
204432
204503
+
Val
GAC
[ENA]
¡û
>C191071830
CP030063
Bacillota
Peribacillus frigoritolerans ZB201705 [CP030063]
1989722
1989651
-
Val
GAC
-
¡û
>W141753889
JNVC02000001
Bacillota
Metabacillus indicus cibi [JNVC]
205256
205327
+
Val
GAC
[ENA]
¡û
>W1910549437
FZPG01000048
Bacillota
Bacillus sp. OK838 [FZPG]
7300
7371
+
Val
GAC
[ENA]
¡û
>W1910755563
MKYS01000018
Bacillota
Peribacillus simplex 313 [MKYS]
36012
36083
+
Val
GAC
[ENA]
¡û
>W1910827231
MWSH01000033
Bacillota
Bacillus sp. DSM 27956 [MWSH]
46244
46315
+
Val
GAC
[ENA]
¡û
>W1910871098
NCWW01000020
Bacillota
Peribacillus simplex OG2 [NCWW]
38276
38347
+
Val
GAC
[ENA]
¡û
>W1910930896
NISV01000001
Bacillota
Neobacillus soli DSM 15604 [NISV]
4044192
4044121
-
Val
GAC
[ENA]
¡û
>W1911145514
NPCL01000008
Bacillota
Bacillus sp. 7586-K [NPCL]
26198
26269
+
Val
GAC
[ENA]
¡û
>W1911146366
NPDD01000140
Bacillota
Bacillus sp. 7884-1 [NPDD]
15622
15551
-
Val
GAC
[ENA]
¡û
>W1911177967
NQLS01000031
Bacillota
Peribacillus simplex 7894 [NQLS]
71550
71479
-
Val
GAC
[ENA]
¡û
>W1911177998
NQLS01000254
Bacillota
Peribacillus simplex 7894 [NQLS]
2131
2060
-
Val
GAC
[ENA]
¡û
>W1911298434
NTTZ01000009
Bacillota
Bacillus sp. AFS017274 [NTTZ]
448114
448043
-
Val
GAC
[ENA]
¡û
>W1911299539
NTUP01000020
Bacillota
Bacillus sp. AFS015802 [NTUP]
43162
43091
-
Val
GAC
[ENA]
¡û
>W1911311177
NUBA01000008
Bacillota
Bacillus sp. AFS026049 [NUBA]
44434
44363
-
Val
GAC
[ENA]
¡û
>W1911317701
NUEQ01000007
Bacillota
Peribacillus butanolivorans AFS003229 [NUEQ]
17709
17638
-
Val
GAC
[ENA]
¡û
>W1911331199
NUMC01000135
Bacillota
Bacillus sp. AFS040349 [NUMC]
17382
17453
+
Val
GAC
[ENA]
¡û
>W1911336312
NUOW01000012
Bacillota
Bacillus sp. AFS031507 [NUOW]
272854
272925
+
Val
GAC
[ENA]
¡û
>W1911343131
NUSS01000003
Bacillota
Bacillus sp. AFS043905 [NUSS]
22588
22517
-
Val
GAC
[ENA]
¡û
>W1911381471
NVNR01000027
Bacillota
Bacillus sp. AFS094228 [NVNR]
140590
140661
+
Val
GAC
[ENA]
¡û
>W1911405097
NWQJ01000002
Bacillota
Peribacillus simplex WY10 [NWQJ]
459477
459406
-
Val
GAC
[ENA]
¡û
>W1911565871
PCOJ01000045
Bacillota
Peribacillus simplex MYb48 [PCOJ]
29994
30065
+
Val
GAC
[ENA]
¡û
>W1810057751
PDIY01000001
Bacillota
Bacillus sp. es.034 [PDIY]
3710954
3710883
-
Val
GAC
[ENA]
¡û
>W1810115891
PHNG01000800
Bacillota
Bacillus sp. mrc49 [PHNG]
262158
262229
+
Val
GAC
[ENA]
¡û
>W1810149093
PISE01000014
Bacillota
Niallia nealsonii FO-92 [PISE]
42342
42413
+
Val
GAC
[ENA]
¡û
>W1810149094
PISE01000014
Bacillota
Niallia nealsonii FO-92 [PISE]
67127
67198
+
Val
GAC
[ENA]
¡û
>W1810154763
PIZR01000004
Bacillota
Bacillus sp. BA3 [PIZR]
74929
74858
-
Val
GAC
[ENA]
¡û
>W1810192090
PKLB01000001
Bacillota
Bacillus sp. UMB0893 [PKLB]
229555
229626
+
Val
GAC
[ENA]
¡û
>W1810361194
PVQJ01000031
Bacillota
Bacillus sp. RJGP41 [PVQJ]
4158
4087
-
Val
GAC
[ENA]
¡û
>W1810367790
PVYY01000033
Bacillota
Bacillus sp. V-88 [PVYY]
46244
46315
+
Val
GAC
[ENA]
¡û
>W1810693741
QLLP01000003
Bacillota
Bacillus sp. YR335 [QLLP]
452092
452166
+
Val
GAC
[ENA]
¡û
>W1810720580
QNRJ01000008
Bacillota
Rossellomorea aquimaris 97B [QNRJ]
130296
130367
+
Val
GAC
[ENA]
¡û
>C151040588
CP008934
Bacillota
Geobacillus stearothermophilus 10 [CP008934]
2646269
2646340
+
Val
GAC
-
¡û
>W1510061082
CCXW01000001
Bacillota
Peribacillus simplex P558 [CCXW]
1563477
1563551
+
Val
GAC
[ENA]
¡û
>C10107220
CP002050
Bacillota
Geobacillus sp. C56-T3 [CP002050]
2828956
2828885
-
Val
GAC
[Ensembl]
¡û
>C10107367
CP001794
Bacillota
Geobacillus sp. Y412MC61 [CP001794]
1689339
1689410
+
Val
GAC
[Ensembl]
¡û
>W1510650583
CVRB01000003
Bacillota
Neobacillus massiliamazoniensis LF1 [CVRB]
785231
785157
-
Val
GAC
[ENA]
¡û
>C11109659
CP002442
Bacillota
Geobacillus sp. Y412MC52 [CP002442]
829283
829354
+
Val
GAC
[Ensembl]
¡û
>W1511455490
JVGU01000182
Bacillota
Bacillus sp. 445_BSPC [JVGU]
29989
30063
+
Val
GAC
[ENA]
¡û
>W1511464042
JVPL01000238
Bacillota
Bacillus sp. 220_BSPC [JVPL]
29726
29800
+
Val
GAC
[ENA]
¡û
>W1511519340
JXZC01000001
Bacillota
Rossellomorea aquimaris JM7 [JXZC]
1125031
1124960
-
Val
GAC
[ENA]
¡û
>W1511523270
JYCE01000061
Bacillota
Bacillus alveayuensis 24KAM51 [JYCE]
14727
14653
-
Val
GAC
[ENA]
¡û
>W1511583548
LATZ01000003
Bacillota
Bacillus sp. SA1-12 [LATZ]
205784
205858
+
Val
GAC
[ENA]
¡û
>C161031051
CP011008
Bacillota
Peribacillus simplex SH-B26 [CP011008]
1307675
1307746
+
Val
GAC
[Ensembl]
¡û
>C161076621
CP014749
Bacillota
Geobacillus sp. JS12 [CP014749]
327114
327185
+
Val
GAC
-
¡û
>W121010274
AGJD01000004
Bacillota
Bacillus sp. 1NLA3E [AGJD]
17327
17252
-
Val
GAC
[ENA]
¡û
>W1610029523
AXBR01000022
Bacillota
Peribacillus simplex BA2H3 [AXBR]
173503
173429
-
Val
GAC
[ENA]
¡û
>W1610072773
BCVG01000178
Bacillota
Metabacillus fastidiosus NBRC 101226 [BCVG]
2773
2848
+
Val
GAC
[ENA]
¡û
>W1610072816
BCVI01000056
Bacillota
Neobacillus soli NBRC 102451 [BCVI]
57203
57277
+
Val
GAC
[ENA]
¡û
>W1610072998
BCVO01000001
Bacillota
Peribacillus simplex NBRC 15720 [BCVO]
438248
438174
-
Val
GAC
[ENA]
¡û
>W1610073040
BCVP01000003
Bacillota
Neobacillus novalis NBRC 102450 [BCVP]
232121
232050
-
Val
GAC
[ENA]
¡û
>W1610073082
BCVQ01000033
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
45718
45791
+
Val
GAC
[ENA]
¡û
>C131015760
CP005586
Bacillota
Bacillus sp. 1NLA3E [CP005586]
1094815
1094890
+
Val
GAC
[Ensembl]
¡û
>W1610586342
LDGI01000045
Bacillota
Peribacillus muralis G25-68 [LDGI]
222775
222701
-
Val
GAC
[ENA]
¡û
>W1610638633
LIXZ01000001
Bacillota
Rossellomorea vietnamensis [LIXZ]
355219
355148
-
Val
GAC
[ENA]
¡û
>W1610721362
LMBV01000003
Bacillota
Peribacillus muralis [LMBV]
163488
163414
-
Val
GAC
[ENA]
¡û
>W1610741343
LMRJ01000045
Bacillota
Bacillus sp. Leaf13 [LMRJ]
232029
232100
+
Val
GAC
[ENA]
¡û
>W1610743657
LMSZ01000035
Bacillota
Bacillus sp. Soil745 [LMSZ]
35794
35868
+
Val
GAC
[ENA]
¡û
>W1610743725
LMTA01000029
Bacillota
Bacillus sp. Soil768D1 [LMTA]
32563
32634
+
Val
GAC
[ENA]
¡û
>W1610764501
LNNH01000035
Bacillota
Peribacillus simplex [LNNH]
29962
30036
+
Val
GAC
[ENA]
¡û
>W1610941446
LUUR01000001
Bacillota
Neobacillus novalis [LUUR]
918988
919059
+
Val
GAC
[ENA]
¡û
>W1610941605
LUUS01000003
Bacillota
Peribacillus frigoritolerans [LUUS]
1275472
1275398
-
Val
GAC
[ENA]
¡û
>W1610989312
LWJH01000004
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
3486460
3486386
-
Val
GAC
[ENA]
¡û
>W1610989450
LWJJ01000088
Bacillota
Peribacillus simplex [LWJJ]
93830
93756
-
Val
GAC
[ENA]
¡û
>W1710026893
AXBR01000022
Bacillota
Peribacillus simplex BA2H3 [AXBR]
173503
173429
-
Val
GAC
[ENA]
¡û
>W1710069891
BCVG01000178
Bacillota
Metabacillus fastidiosus NBRC 101226 [BCVG]
2773
2848
+
Val
GAC
[ENA]
¡û
>W1710069934
BCVI01000056
Bacillota
Neobacillus soli NBRC 102451 [BCVI]
57203
57277
+
Val
GAC
[ENA]
¡û
>W1710070116
BCVO01000001
Bacillota
Peribacillus simplex NBRC 15720 [BCVO]
438248
438174
-
Val
GAC
[ENA]
¡û
>W1710070158
BCVP01000003
Bacillota
Neobacillus novalis NBRC 102450 [BCVP]
232121
232050
-
Val
GAC
[ENA]
¡û
>W1710070200
BCVQ01000033
Bacillota
Rossellomorea vietnamensis NBRC 101237 [BCVQ]
45718
45791
+
Val
GAC
[ENA]
¡û
>W1710522832
FNHN01000008
Bacillota
Bacillus sp. OK048 [FNHN]
225167
225238
+
Val
GAC
[ENA]
¡û
>W1710525770
FNJU01000002
Bacillota
Litchfieldia salsa salsus [FNJU]
515586
515510
-
Val
GAC
[ENA]
¡û
>W1710597003
FTMX01000002
Bacillota
Peribacillus simplex [FTMX]
447519
447445
-
Val
GAC
[ENA]
¡û
>W1710604724
FVZH01000033
Bacillota
Bacillus sp. V-88 [FVZH]
46244
46315
+
Val
GAC
[ENA]
¡û
>W1710609521
FXWM01000001
Bacillota
Bacillus sp. OV166 [FXWM]
1691547
1691621
+
Val
GAC
[ENA]
¡û
>W1710774464
LIXZ01000001
Bacillota
Rossellomorea vietnamensis [LIXZ]
355219
355148
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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