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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339584 (112 seq.)
>W1710921084
LNZF01000004
Bacillota
Paenibacillus polymyxa [LNZF]
1403
1477
+
Cys
GCA
[ENA]
¡û
>W1711009840
LQQX01000068
Bacillota
Paenibacillus jamilae [LQQX]
241588
241514
-
Cys
GCA
[ENA]
¡û
>W1711113491
LTYJ01000016
Bacillota
Paenibacillus polymyxa [LTYJ]
103964
103890
-
Cys
GCA
[ENA]
¡û
>W1711113547
LTYJ01000083
Bacillota
Paenibacillus polymyxa [LTYJ]
4727
4656
-
Cys
GCA
[ENA]
¡û
>W131174372
ARIL01000012
Bacillota
Paenibacillus massiliensis 2301065 = DSM 16942 [ARIL]
2048
2119
+
Cys
GCA
[ENA]
¡û
>W1711250651
LYND01000173
Bacillota
Paenibacillus polymyxa [LYND]
386004
385930
-
Cys
GCA
[ENA]
¡û
>W1711267619
LZCE01000073
Bacillota
Paenibacillus polymyxa [LZCE]
1362
1436
+
Cys
GCA
[ENA]
¡û
>W1711270693
LZEL01000069
Bacillota
Paenibacillus polymyxa [LZEL]
351105
351031
-
Cys
GCA
[ENA]
¡û
>W1711302079
MAIS01000396
Bacillota
Paenibacillus sp. KS1 [MAIS]
34
108
+
Cys
GCA
[ENA]
¡û
>W131227949
AUFO01000012
Bacillota
Paenibacillus massiliensis DSM 21345 [AUFO]
2094
2165
+
Cys
GCA
[ENA]
¡û
>W1711340462
MCBP01000005
Bacillota
Paenibacillus kribbensis [MCBP]
394824
394750
-
Cys
GCA
[ENA]
¡û
>W1711340520
MCBP01000037
Bacillota
Paenibacillus kribbensis [MCBP]
1983
2054
+
Cys
GCA
[ENA]
¡û
>W1711676866
MRTC01000005
Bacillota
Paenibacillus peoriae [MRTC]
349
423
+
Cys
GCA
[ENA]
¡û
>W1711677396
MRTM01000011
Bacillota
Paenibacillus peoriae [MRTM]
337
411
+
Cys
GCA
[ENA]
¡û
>W1711677464
MRTN01000013
Bacillota
Paenibacillus peoriae [MRTN]
195342
195268
-
Cys
GCA
[ENA]
¡û
>W1711677480
MRTN01000034
Bacillota
Paenibacillus peoriae [MRTN]
4200
4129
-
Cys
GCA
[ENA]
¡û
>W1711677886
MRTU01000005
Bacillota
Paenibacillus peoriae [MRTU]
180
254
+
Cys
GCA
[ENA]
¡û
>W1711677937
MRTV01000007
Bacillota
Paenibacillus peoriae [MRTV]
180
254
+
Cys
GCA
[ENA]
¡û
>C171010604
CP011420
Bacillota
Paenibacillus polymyxa ATCC 15970 [CP011420]
4964207
4964133
-
Cys
GCA
-
¡û
>C171038765
CP015423
Bacillota
Paenibacillus polymyxa J [CP015423]
3250394
3250465
+
Cys
GCA
-
¡û
>C171038824
CP015423
Bacillota
Paenibacillus polymyxa J [CP015423]
1813406
1813332
-
Cys
GCA
-
¡û
>C171070791
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
417652
417723
+
Cys
GCA
-
¡û
>C171070837
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
4586576
4586502
-
Cys
GCA
-
¡û
>C171070933
CP017968
Bacillota
Paenibacillus polymyxa YC0573 [CP017968]
5002025
5001951
-
Cys
GCA
-
¡û
>W131044642
AMQU01000033
Bacillota
Paenibacillus sp. ICGEB2008 [AMQU]
1482
1556
+
Cys
GCA
[ENA]
¡û
>W131234966
AULE01000025
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
23851
23925
+
Cys
GCA
[ENA]
¡û
>WENV180200174
OBAE01011857
[OBAE] human gut metagenome; human gut
1756
1682
-
Cys
GCA
[ENA]
¢þ
>W141034855
ALJV01000204
Bacillota
Paenibacillus polymyxa WLY78 [ALJV]
342
416
+
Cys
GCA
[ENA]
¡û
>W141073188
ASRY01000308
Bacillota
Paenibacillus maysiensis 1-49 [ASRY]
15937
15866
-
Cys
GCA
[ENA]
¡û
>W141073245
ASRZ01000166
Bacillota
Paenibacillus polymyxa 1-43 [ASRZ]
6979
6905
-
Cys
GCA
[ENA]
¡û
>W141073275
ASSA01000046
Bacillota
Paenibacillus polymyxa TD94 [ASSA]
13675
13601
-
Cys
GCA
[ENA]
¡û
>W141073336
ASSB01000270
Bacillota
Paenibacillus sp. 1-18 [ASSB]
342
416
+
Cys
GCA
[ENA]
¡û
>W141073466
ASSE01000134
Bacillota
Paenibacillus massiliensis T7 [ASSE]
94
23
-
Cys
GCA
[ENA]
¡û
>W141080227
ATMS01000031
Bacillota
Paenibacillus alvei A6-6i-x [ATMS]
70026
69952
-
Cys
GCA
[ENA]
¡û
>W141080311
ATMT01000022
Bacillota
Paenibacillus alvei TS-15 [ATMT]
1510
1436
-
Cys
GCA
[ENA]
¡û
>WENV180869537
ODLM01090846
[ODLM] human metagenome; G_DNA_Stool
213
139
-
Cys
GCA
[ENA]
¢þ
>WENV180962534
ODUN01014590
[ODUN] human metagenome; G_DNA_Stool
50
124
+
Cys
GCA
[ENA]
¢þ
>WENV181056507
ODYJ01007432
[ODYJ] human metagenome; G_DNA_Stool
2261
2187
-
Cys
GCA
[ENA]
¢þ
>WENV181148872
OEHT01011494
[OEHT] human metagenome; G_DNA_Stool
2465
2391
-
Cys
GCA
[ENA]
¢þ
>WENV181788905
OGRO01005170
[OGRO] human gut metagenome; faeces
8181
8107
-
Cys
GCA
[ENA]
¢þ
>WENV181862844
OGWS01043791
[OGWS] human gut metagenome; faeces
505
431
-
Cys
GCA
[ENA]
¢þ
>WENV181896578
OGXS01001030
[OGXS] human gut metagenome; faeces
20779
20705
-
Cys
GCA
[ENA]
¢þ
>WENV182879575
OKRZ01018622
[OKRZ] human gut metagenome; faeces
6
80
+
Cys
GCA
[ENA]
¢þ
>WENV183064673
OLIH01034419
[OLIH] metagenome; faeces
370
296
-
Cys
GCA
[ENA]
¢þ
>WENV183102688
OLNI01002180
[OLNI] human gut metagenome; faeces
185
259
+
Cys
GCA
[ENA]
¢þ
>WENV183169695
OLPA01007608
[OLPA] human gut metagenome; faeces
2785
2711
-
Cys
GCA
[ENA]
¢þ
>WENV183176733
OLPF01045519
[OLPF] human gut metagenome; faeces
540
466
-
Cys
GCA
[ENA]
¢þ
>WENV183201603
OLPW01063199
[OLPW] human gut metagenome; faeces
736
662
-
Cys
GCA
[ENA]
¢þ
>WENV183202688
OLPX01017457
[OLPX] human gut metagenome; faeces
137
211
+
Cys
GCA
[ENA]
¢þ
>WENV183216088
OLQH01000158
[OLQH] human gut metagenome; faeces
22697
22771
+
Cys
GCA
[ENA]
¢þ
>WENV183268516
OLRU01007443
[OLRU] human gut metagenome; faeces
117
191
+
Cys
GCA
[ENA]
¢þ
>WENV183750963
PPYE01001127
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
529
455
-
Cys
GCA
[ENA]
¢þ
>WENV183774766
PPYF01052845
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1287
1213
-
Cys
GCA
[ENA]
¢þ
>WENV183783858
PPYF01242012
[PPYF] human gut metagenome; stool from patient with Crohn's disease
37219
37293
+
Cys
GCA
[ENA]
¢þ
>C181029279
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
418074
418145
+
Cys
GCA
-
¡û
>C181029325
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
4586998
4586924
-
Cys
GCA
-
¡û
>C181029421
CP017968
Bacillota
Paenibacillus polymyxa YC0573 [CP017968]
5002449
5002375
-
Cys
GCA
-
¡û
>C181043103
CP020028
Bacillota
Paenibacillus kribbensis AM49 [CP020028]
973011
973085
+
Cys
GCA
-
¡û
>C181043149
CP020028
Bacillota
Paenibacillus kribbensis AM49 [CP020028]
5198605
5198534
-
Cys
GCA
-
¡û
>C181121254
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
2754447
2754521
+
Cys
GCA
-
¡û
>C181124472
CP025957
Bacillota
Paenibacillus polymyxa HY96-2 [CP025957]
4709677
4709603
-
Cys
GCA
-
¡û
>C191120143
CP034141
Bacillota
Paenibacillus sp. M-152 [CP034141]
4849588
4849514
-
Cys
GCA
-
¡û
>C191183126
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
2901615
2901689
+
Cys
GCA
-
¡û
>W141699881
JMIQ01000007
Bacillota
Paenibacillus polymyxa [JMIQ]
355912
355838
-
Cys
GCA
[ENA]
¡û
>W141702735
JMLR01000008
Bacillota
Paenibacillus sp. UNCCL52 [JMLR]
804
878
+
Cys
GCA
[ENA]
¡û
>W141702858
JMLT01000011
Bacillota
Paenibacillus sp. UNC217MF [JMLT]
795
869
+
Cys
GCA
[ENA]
¡û
>W141726743
JNCB01000003
Bacillota
Paenibacillus polymyxa [JNCB]
387598
387524
-
Cys
GCA
[ENA]
¡û
>W1910007095
BBYF01000012
Bacillota
Paenibacillus sp. NAIST15-1 [BBYF]
200570
200496
-
Cys
GCA
[ENA]
¡û
>C141010957
CP006941
Bacillota
Paenibacillus polymyxa CR1 [CP006941]
4866293
4866219
-
Cys
GCA
-
¡û
>W1911118602
NOLA01000013
Bacillota
Paenibacillus polymyxa LY214 [NOLA]
1269
1343
+
Cys
GCA
[ENA]
¡û
>W1911551743
OXKC01000008
Bacillota
Paenibacillus polymyxa [OXKC]
1110
1184
+
Cys
GCA
[ENA]
¡û
>W1911608599
PNXP01000026
Bacillota
Paenibacillus polymyxa PIC73 [PNXP]
347963
347889
-
Cys
GCA
[ENA]
¡û
>W1911608615
PNXQ01000001
Bacillota
Paenibacillus terrae PIC167 [PNXQ]
347338
347264
-
Cys
GCA
[ENA]
¡û
>W1810225450
POVS01000020
Bacillota
Paenibacillus sp. F4 [POVS]
1330
1404
+
Cys
GCA
[ENA]
¡û
>W1810225470
POVS01000039
Bacillota
Paenibacillus sp. F4 [POVS]
1826
1897
+
Cys
GCA
[ENA]
¡û
>W1810225516
POVT01000012
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
1316
1390
+
Cys
GCA
[ENA]
¡û
>W1810296637
PTJM01000019
Bacillota
Paenibacillus peoriae IBSD35 [PTJM]
4415
4344
-
Cys
GCA
[ENA]
¡û
>W1810296690
PTJM01000065
Bacillota
Paenibacillus peoriae IBSD35 [PTJM]
403441
403367
-
Cys
GCA
[ENA]
¡û
>W1810476647
QAOE01000008
Bacillota
Paenibacillus polymyxa KP10 [QAOE]
203485
203411
-
Cys
GCA
[ENA]
¡û
>W1810836267
QSRT01000022
Bacillota
Paenibacillus polymyxa TF07-21-d [QSRT]
1521
1595
+
Cys
GCA
[ENA]
¡û
>W1810914522
QVPU01000004
Bacillota
Paenibacillus jamilae KACC 10925 [QVPU]
369268
369194
-
Cys
GCA
[ENA]
¡û
>C151013788
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
4796324
4796250
-
Cys
GCA
[Ensembl]
¡û
>C151064965
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
3692666
3692740
+
Cys
GCA
[Ensembl]
¡û
>C151083788
CP011512
Bacillota
Paenibacillus peoriae HS311 [CP011512]
4876880
4876806
-
Cys
GCA
-
¡û
>C10110370
CP000154
Bacillota
Paenibacillus polymyxa E681 [CP000154]
4322173
4322099
-
Cys
GCA
[Ensembl]
¡û
>W1510647478
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
3515460
3515534
+
Cys
GCA
[ENA]
¡û
>W1511185336
JMDX01000335
Bacillota
Paenibacillus sp. E194 [JMDX]
3760
3686
-
Cys
GCA
[ENA]
¡û
>C11117602
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
4839046
4838972
-
Cys
GCA
[Ensembl]
¡û
>C11117711
CP002213
Bacillota
Paenibacillus polymyxa SC2 [CP002213]
4702348
4702274
-
Cys
GCA
[Ensembl]
¡û
>W1511401429
JTHO01000023
Bacillota
Paenibacillus polymyxa NRRL B-30509 [JTHO]
83904
83830
-
Cys
GCA
[ENA]
¡û
>W1511401548
JTHP01000066
Bacillota
Paenibacillus terrae NRRL B-30644 [JTHP]
1281
1355
+
Cys
GCA
[ENA]
¡û
>W1511480755
JWJJ01000004
Bacillota
Paenibacillus polymyxa A18 [JWJJ]
1266
1340
+
Cys
GCA
[ENA]
¡û
>W1511523914
JYCW01000013
Bacillota
Paenibacillus polymyxa EBL06 [JYCW]
205503
205429
-
Cys
GCA
[ENA]
¡û
>W1511577685
LAQZ01000077
Bacillota
Ruminococcus sp. A254.MGS-108 [LAQZ]
1065
1139
+
Cys
GCA
[ENA]
¡û
>W11169798
AFOX01000034
Bacillota
Paenibacillus polymyxa ATCC 842 [AFOX]
202133
202059
-
Cys
GCA
[ENA]
¡û
>C121005911
CP003107
Bacillota
Paenibacillus terrae HPL-003 [CP003107]
497755
497681
-
Cys
GCA
[Ensembl]
¡û
>C161022668
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
1922910
1922836
-
Cys
GCA
[Ensembl]
¡û
>W121009626
AGFI01000027
Bacillota
Paenibacillus sp. Aloe-11 [AGFI]
1691
1762
+
Cys
GCA
[ENA]
¡û
>W121009923
AGFX01000017
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
4543
4472
-
Cys
GCA
[ENA]
¡û
>W121009660
AGFI01000234
Bacillota
Paenibacillus sp. Aloe-11 [AGFI]
13401
13327
-
Cys
GCA
[ENA]
¡û
>W121009904
AGFX01000016
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
135488
135414
-
Cys
GCA
[ENA]
¡û
>W121122942
AMBZ01000010
Bacillota
Paenibacillus alvei DSM 29 [AMBZ]
188517
188443
-
Cys
GCA
[ENA]
¡û
>W1610778982
LNZF01000004
Bacillota
Paenibacillus polymyxa [LNZF]
1403
1477
+
Cys
GCA
[ENA]
¡û
>W1610858360
LQQX01000068
Bacillota
Paenibacillus jamilae [LQQX]
241588
241514
-
Cys
GCA
[ENA]
¡û
>W1610926543
LTYJ01000016
Bacillota
Paenibacillus polymyxa [LTYJ]
103964
103890
-
Cys
GCA
[ENA]
¡û
>W1610926599
LTYJ01000083
Bacillota
Paenibacillus polymyxa [LTYJ]
4727
4656
-
Cys
GCA
[ENA]
¡û
>W1611028812
LZCE01000073
Bacillota
Paenibacillus polymyxa [LZCE]
1362
1436
+
Cys
GCA
[ENA]
¡û
>W1611030257
LZEL01000069
Bacillota
Paenibacillus polymyxa [LZEL]
351105
351031
-
Cys
GCA
[ENA]
¡û
>W1611052867
MAIS01000396
Bacillota
Paenibacillus sp. KS1 [MAIS]
34
108
+
Cys
GCA
[ENA]
¡û
>W1710514531
FNAZ01000008
Bacillota
Paenibacillus sp. cl6col [FNAZ]
304847
304773
-
Cys
GCA
[ENA]
¡û
>W1710542122
FNYX01000005
Bacillota
Paenibacillus polymyxa 181mfcol5.1 [FNYX]
365474
365400
-
Cys
GCA
[ENA]
¡û
>W1710574440
FOYG01000006
Bacillota
Paenibacillus sp. cl130 [FOYG]
374218
374144
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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