This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339586 (84 seq.)
>W1710921115
LNZF01000009
Bacillota
Paenibacillus polymyxa [LNZF]
27134
27060
-
Arg
CCG
[ENA]
¡û
>W131044614
AMQU01000020
Bacillota
Paenibacillus sp. ICGEB2008 [AMQU]
47372
47446
+
Arg
CCG
[ENA]
¡û
>W1711009866
LQQX01000122
Bacillota
Paenibacillus jamilae [LQQX]
27018
26944
-
Arg
CCG
[ENA]
¡û
>W1711113502
LTYJ01000021
Bacillota
Paenibacillus polymyxa [LTYJ]
27436
27362
-
Arg
CCG
[ENA]
¡û
>W1711250312
LYMX01000127
Bacillota
Paenibacillus polymyxa [LYMX]
12664
12738
+
Arg
CCG
[ENA]
¡û
>W1711250345
LYMY01000142
Bacillota
Paenibacillus polymyxa [LYMY]
26235
26309
+
Arg
CCG
[ENA]
¡û
>W1711250591
LYND01000022
Bacillota
Paenibacillus polymyxa [LYND]
200316
200390
+
Arg
CCG
[ENA]
¡û
>W1711267575
LZCE01000045
Bacillota
Paenibacillus polymyxa [LZCE]
26113
26187
+
Arg
CCG
[ENA]
¡û
>W1711270675
LZEL01000050
Bacillota
Paenibacillus polymyxa [LZEL]
26337
26263
-
Arg
CCG
[ENA]
¡û
>W1711340467
MCBP01000008
Bacillota
Paenibacillus kribbensis [MCBP]
239431
239505
+
Arg
CCG
[ENA]
¡û
>W1711636576
MPVN01000010
Bacillota
Paenibacillus sp. FSL H7-0326 [MPVN]
26124
26050
-
Arg
CCG
[ENA]
¡û
>W1711676871
MRTC01000010
Bacillota
Paenibacillus peoriae [MRTC]
200228
200302
+
Arg
CCG
[ENA]
¡û
>W1711677402
MRTM01000012
Bacillota
Paenibacillus peoriae [MRTM]
26819
26745
-
Arg
CCG
[ENA]
¡û
>W1711677461
MRTN01000009
Bacillota
Paenibacillus peoriae [MRTN]
26965
26891
-
Arg
CCG
[ENA]
¡û
>W1711677890
MRTU01000008
Bacillota
Paenibacillus peoriae [MRTU]
203807
203881
+
Arg
CCG
[ENA]
¡û
>W1711677943
MRTV01000009
Bacillota
Paenibacillus peoriae [MRTV]
26583
26509
-
Arg
CCG
[ENA]
¡û
>C171010641
CP011420
Bacillota
Paenibacillus polymyxa ATCC 15970 [CP011420]
215925
215851
-
Arg
CCG
-
¡û
>C171038795
CP015423
Bacillota
Paenibacillus polymyxa J [CP015423]
3072033
3071959
-
Arg
CCG
-
¡û
>C171070853
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
216418
216344
-
Arg
CCG
-
¡û
>C171070949
CP017968
Bacillota
Paenibacillus polymyxa YC0573 [CP017968]
215112
215038
-
Arg
CCG
-
¡û
>W141034861
ALJV01000232
Bacillota
Paenibacillus polymyxa WLY78 [ALJV]
12062
12136
+
Arg
CCG
[ENA]
¡û
>W141073192
ASRY01000315
Bacillota
Paenibacillus maysiensis 1-49 [ASRY]
7999
7925
-
Arg
CCG
[ENA]
¡û
>W141073217
ASRZ01000091
Bacillota
Paenibacillus polymyxa 1-43 [ASRZ]
30197
30123
-
Arg
CCG
[ENA]
¡û
>W141073305
ASSA01000381
Bacillota
Paenibacillus polymyxa TD94 [ASSA]
14527
14601
+
Arg
CCG
[ENA]
¡û
>W141073329
ASSB01000229
Bacillota
Paenibacillus sp. 1-18 [ASSB]
15663
15589
-
Arg
CCG
[ENA]
¡û
>W141220219
AZXQ01000005
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
781880
781954
+
Arg
CCG
[ENA]
¡û
>W141237173
BBIW01000016
Bacillota
Paenibacillus sp. TCA20 [BBIW]
25884
25810
-
Arg
CCG
[ENA]
¡û
>W141251585
CBQR020000139
Bacillota
Gorillibacterium massiliense G5 [CBQR]
17888
17814
-
Arg
CCG
[ENA]
¡û
>WENV170998046
MWWI01002918
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
657
583
-
Arg
CCG
[ENA]
¢þ
>C181029341
CP017967
Bacillota
Paenibacillus polymyxa YC0136 [CP017967]
216840
216766
-
Arg
CCG
-
¡û
>C181029437
CP017968
Bacillota
Paenibacillus polymyxa YC0573 [CP017968]
215536
215462
-
Arg
CCG
-
¡û
>C181043119
CP020028
Bacillota
Paenibacillus kribbensis AM49 [CP020028]
5442740
5442814
+
Arg
CCG
-
¡û
>C181121225
CP025696
Bacillota
Paenibacillus sp. lzh-N1 [CP025696]
1499991
1500065
+
Arg
CCG
-
¡û
>C181124488
CP025957
Bacillota
Paenibacillus polymyxa HY96-2 [CP025957]
210938
210864
-
Arg
CCG
-
¡û
>C191120159
CP034141
Bacillota
Paenibacillus sp. M-152 [CP034141]
315765
315691
-
Arg
CCG
-
¡û
>C191183097
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
1673543
1673617
+
Arg
CCG
-
¡û
>W141699884
JMIQ01000017
Bacillota
Paenibacillus polymyxa [JMIQ]
107403
107477
+
Arg
CCG
[ENA]
¡û
>W141702747
JMLR01000011
Bacillota
Paenibacillus sp. UNCCL52 [JMLR]
27512
27438
-
Arg
CCG
[ENA]
¡û
>W141726777
JNCB01000008
Bacillota
Paenibacillus polymyxa [JNCB]
890548
890474
-
Arg
CCG
[ENA]
¡û
>W141726831
JNCB01000017
Bacillota
Paenibacillus polymyxa [JNCB]
84654
84580
-
Arg
CCG
[ENA]
¡û
>C141010972
CP006941
Bacillota
Paenibacillus polymyxa CR1 [CP006941]
120069
119995
-
Arg
CCG
-
¡û
>W1911118579
NOLA01000008
Bacillota
Paenibacillus polymyxa LY214 [NOLA]
224131
224205
+
Arg
CCG
[ENA]
¡û
>W1911551766
OXKC01000011
Bacillota
Paenibacillus polymyxa [OXKC]
27438
27364
-
Arg
CCG
[ENA]
¡û
>W1911608547
PNXP01000005
Bacillota
Paenibacillus polymyxa PIC73 [PNXP]
26733
26659
-
Arg
CCG
[ENA]
¡û
>W1911608629
PNXQ01000009
Bacillota
Paenibacillus terrae PIC167 [PNXQ]
25666
25592
-
Arg
CCG
[ENA]
¡û
>W1810225402
POVS01000011
Bacillota
Paenibacillus sp. F4 [POVS]
27347
27273
-
Arg
CCG
[ENA]
¡û
>W1810225496
POVT01000010
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
12238
12312
+
Arg
CCG
[ENA]
¡û
>W1810296666
PTJM01000048
Bacillota
Paenibacillus peoriae IBSD35 [PTJM]
27367
27293
-
Arg
CCG
[ENA]
¡û
>W1810476639
QAOE01000005
Bacillota
Paenibacillus polymyxa KP10 [QAOE]
27230
27156
-
Arg
CCG
[ENA]
¡û
>W1810836279
QSRT01000035
Bacillota
Paenibacillus polymyxa TF07-21-d [QSRT]
27279
27205
-
Arg
CCG
[ENA]
¡û
>W1810914532
QVPU01000020
Bacillota
Paenibacillus jamilae KACC 10925 [QVPU]
64760
64834
+
Arg
CCG
[ENA]
¡û
>C151013804
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
210558
210484
-
Arg
CCG
[Ensembl]
¡û
>C151064936
CP010268
Bacillota
Paenibacillus polymyxa Sb3-1 [CP010268]
2454160
2454234
+
Arg
CCG
[Ensembl]
¡û
>C151083804
CP011512
Bacillota
Paenibacillus peoriae HS311 [CP011512]
215384
215310
-
Arg
CCG
-
¡û
>C10110386
CP000154
Bacillota
Paenibacillus polymyxa E681 [CP000154]
216730
216656
-
Arg
CCG
[Ensembl]
¡û
>W1510647449
CVPD01000001
Bacillota
Paenibacillus sp. Mc5Re-14 [CVPD]
2279514
2279588
+
Arg
CCG
[ENA]
¡û
>C11117618
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
212324
212250
-
Arg
CCG
[Ensembl]
¡û
>C11117727
CP002213
Bacillota
Paenibacillus polymyxa SC2 [CP002213]
213932
213858
-
Arg
CCG
[Ensembl]
¡û
>W1511401403
JTHO01000010
Bacillota
Paenibacillus polymyxa NRRL B-30509 [JTHO]
27115
27041
-
Arg
CCG
[ENA]
¡û
>W1511401431
JTHO01000024
Bacillota
Paenibacillus polymyxa NRRL B-30509 [JTHO]
22517
22591
+
Arg
CCG
[ENA]
¡û
>W1511401493
JTHP01000005
Bacillota
Paenibacillus terrae NRRL B-30644 [JTHP]
144813
144887
+
Arg
CCG
[ENA]
¡û
>W1511480770
JWJJ01000006
Bacillota
Paenibacillus polymyxa A18 [JWJJ]
192526
192600
+
Arg
CCG
[ENA]
¡û
>W1511499714
JXAL01000001
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
727386
727460
+
Arg
CCG
[ENA]
¡û
>W1511523927
JYCW01000015
Bacillota
Paenibacillus polymyxa EBL06 [JYCW]
26822
26748
-
Arg
CCG
[ENA]
¡û
>W11169748
AFOX01000004
Bacillota
Paenibacillus polymyxa ATCC 842 [AFOX]
27138
27064
-
Arg
CCG
[ENA]
¡û
>C121005882
CP003107
Bacillota
Paenibacillus terrae HPL-003 [CP003107]
1795033
1794959
-
Arg
CCG
[Ensembl]
¡û
>C161022642
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
3211579
3211505
-
Arg
CCG
[Ensembl]
¡û
>C161052954
CP013203
Bacillota
Paenibacillus sp. IHB B 3084 [CP013203]
2387256
2387330
+
Arg
CCG
-
¡û
>W121059956
AIPP01000131
Bacillota
Paenibacillus polymyxa OSY-DF [AIPP]
29845
29771
-
Arg
CCG
[ENA]
¡û
>W1610049661
BBFE01000038
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
12091
12165
+
Arg
CCG
[ENA]
¡û
>W121009608
AGFI01000013
Bacillota
Paenibacillus sp. Aloe-11 [AGFI]
13740
13666
-
Arg
CCG
[ENA]
¡û
>W121009938
AGFX01000038
Bacillota
Paenibacillus peoriae KCTC 3763 [AGFX]
205189
205263
+
Arg
CCG
[ENA]
¡û
>W1610591011
LDRX01000049
Bacillota
Paenibacillus jamilae [LDRX]
21450
21524
+
Arg
CCG
[ENA]
¡û
>W1610779013
LNZF01000009
Bacillota
Paenibacillus polymyxa [LNZF]
27134
27060
-
Arg
CCG
[ENA]
¡û
>W1610858386
LQQX01000122
Bacillota
Paenibacillus jamilae [LQQX]
27018
26944
-
Arg
CCG
[ENA]
¡û
>W1610926554
LTYJ01000021
Bacillota
Paenibacillus polymyxa [LTYJ]
27436
27362
-
Arg
CCG
[ENA]
¡û
>W1611028768
LZCE01000045
Bacillota
Paenibacillus polymyxa [LZCE]
26113
26187
+
Arg
CCG
[ENA]
¡û
>W1611030239
LZEL01000050
Bacillota
Paenibacillus polymyxa [LZEL]
26337
26263
-
Arg
CCG
[ENA]
¡û
>W1710046060
BBFE01000038
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
12091
12165
+
Arg
CCG
[ENA]
¡û
>W1710529158
FNNT01000016
Bacillota
Paenibacillus sp. PDC88 [FNNT]
25996
25922
-
Arg
CCG
[ENA]
¡û
>W1710542125
FNYX01000007
Bacillota
Paenibacillus polymyxa 181mfcol5.1 [FNYX]
191491
191565
+
Arg
CCG
[ENA]
¡û
>W1710574444
FOYG01000009
Bacillota
Paenibacillus sp. cl130 [FOYG]
204127
204201
+
Arg
CCG
[ENA]
¡û
>W1710576577
FPAC01000011
Bacillota
Paenibacillus sp. 453mf [FPAC]
28043
28117
+
Arg
CCG
[ENA]
¡û
>W1710710291
LDRX01000049
Bacillota
Paenibacillus jamilae [LDRX]
21450
21524
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK