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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339594 (113 seq.)
>W1710891821
LNDB01000017
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
3100
3174
+
Gly
GCC
[ENA]
¡û
>W1710891832
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
896
822
-
Gly
GCC
[ENA]
¡û
>W1710923798
LOCK01000016
Bacillota
Desulfitobacterium hafniense [LOCK]
19695
19769
+
Gly
GCC
[ENA]
¡û
>W1710923825
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
678
604
-
Gly
GCC
[ENA]
¡û
>W1710927108
LOEZ01000081
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
36881
36807
-
Gly
GCC
[ENA]
¡û
>W1711342430
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
169856
169930
+
Gly
GCC
[ENA]
¡û
>W1711342459
MCHF01000040
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
23245
23171
-
Gly
GCC
[ENA]
¡û
>W1711510581
MLBF01000054
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
2449
2523
+
Gly
GCC
[ENA]
¡û
>W1711926241
NADJ01000002
Bacillota
Desulfosporosinus sp. FKB [NADJ]
4776
4850
+
Gly
GCC
[ENA]
¡û
>W1711926252
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6322
6396
+
Gly
GCC
[ENA]
¡û
>W1711932726
NAHZ01000006
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
25055
24981
-
Gly
GCC
[ENA]
¡û
>W1711932738
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1468
1394
-
Gly
GCC
[ENA]
¡û
>W131162547
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
25494
25420
-
Gly
GCC
[ENA]
¡û
>W131162558
AQYY01000026
Bacillota
Dehalobacter sp. FTH1 [AQYY]
2960
2886
-
Gly
GCC
[ENA]
¡û
>W131162732
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
3128
3054
-
Gly
GCC
[ENA]
¡û
>W131162750
AQZD01000021
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
63588
63514
-
Gly
GCC
[ENA]
¡û
>W131162810
AQZF01000003
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
19620
19694
+
Gly
GCC
[ENA]
¡û
>W131164674
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
15163
15089
-
Gly
GCC
[ENA]
¡û
>W131164688
ARAZ01000026
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
60617
60543
-
Gly
GCC
[ENA]
¡û
>C007775
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
261915
261989
+
Gly
GCC
[Ensembl]
¡û
>C007794
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1723449
1723523
+
Gly
GCC
[Ensembl]
¡û
>WENV180342712
OBLJ01100595
[OBLJ] soil metagenome; Clay
312
238
-
Gly
GCC
[ENA]
¢þ
>WENV180345902
OBLN01010541
[OBLN] sediment metagenome; sediment
453
527
+
Gly
GCC
[ENA]
¢þ
>w002201
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
68622
68551
-
Gly
GCC
[ENA]
¡û
>w002186
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
71773
71702
-
Gly
GCC
[ENA]
¡û
>w002165
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
381807
381736
-
Gly
GCC
[ENA]
¡û
>W141088294
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
17539
17465
-
Gly
GCC
[ENA]
¡û
>W141246566
CANE01000029
Bacillota
Dehalobacter restrictus E1 [CANE]
8595
8669
+
Gly
GCC
[ENA]
¡û
>W141246576
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
14697
14771
+
Gly
GCC
[ENA]
¡û
>W141246604
CANF01000022
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
8594
8668
+
Gly
GCC
[ENA]
¡û
>W141246658
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
5532
5458
-
Gly
GCC
[ENA]
¡û
>WENV170658840
JUEG02001172
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
477
551
+
Gly
GCC
[ENA]
¢þ
>WENV170658847
JUEG02001194
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
27697
27623
-
Gly
GCC
[ENA]
¢þ
>WENV170658859
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
1954
1880
-
Gly
GCC
[ENA]
¢þ
>WENV170658907
JUEG02001334
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
255942
256016
+
Gly
GCC
[ENA]
¢þ
>WENV170784111
MCHG01000017
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
20655
20729
+
Gly
GCC
[ENA]
¢þ
>WENV170784119
MCHG01000018
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
135302
135376
+
Gly
GCC
[ENA]
¢þ
>C09103971
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
196845
196919
+
Gly
GCC
[Ensembl]
¡û
>C09103990
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2798128
2798202
+
Gly
GCC
[Ensembl]
¡û
>C09104005
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2801279
2801353
+
Gly
GCC
[Ensembl]
¡û
>C141011725
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
235815
235889
+
Gly
GCC
[Ensembl]
¡û
>C141011744
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1153532
1153606
+
Gly
GCC
[Ensembl]
¡û
>W1910647145
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
25463
25389
-
Gly
GCC
[ENA]
¡û
>W1910647182
LXPC01000019
Bacillota
Dehalobacter sp. MCB1 [LXPC]
8903
8977
+
Gly
GCC
[ENA]
¡û
>W1911608687
PNXX01000005
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
45924
45850
-
Gly
GCC
[ENA]
¡û
>W1911608712
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
23186
23260
+
Gly
GCC
[ENA]
¡û
>W1911613542
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
25214
25140
-
Gly
GCC
[ENA]
¡û
>W1911613572
POSF01000021
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
48578
48504
-
Gly
GCC
[ENA]
¡û
>W1830000684
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
5043
5117
+
Gly
GCC
[ENA]
¡û
>W1830000687
OMOF01000956
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
1688
1614
-
Gly
GCC
[ENA]
¡û
>C153000275
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2174448
2174374
-
Gly
GCC
[Ensembl]
¡û
>C153000276
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2172691
2172617
-
Gly
GCC
[Ensembl]
¡û
>C151016304
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
103586
103660
+
Gly
GCC
[Ensembl]
¡û
>W11301802
AGAF01000222
Bacillota
Desulfosporosinus sp. OT [AGAF]
23103
23029
-
Gly
GCC
[ENA]
¡û
>W11301803
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
1488
1414
-
Gly
GCC
[ENA]
¡û
>W11301892
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
112034
111960
-
Gly
GCC
[ENA]
¡û
>W11301894
AGJA01000017
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
1833
1759
-
Gly
GCC
[ENA]
¡û
>W11301897
AGJB01000029
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1171
1097
-
Gly
GCC
[ENA]
¡û
>W1511187126
JMGA01000040
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
27026
26952
-
Gly
GCC
[ENA]
¡û
>W1511187133
JMGA01000060
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
340
414
+
Gly
CCC
[ENA]
¡û
>W1511327357
JQID01000098
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2927
2853
-
Gly
GCC
[ENA]
¡û
>C11120616
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
252642
252716
+
Gly
GCC
[Ensembl]
¡û
>C11120648
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2270292
2270218
-
Gly
GCC
[Ensembl]
¡û
>W1511430053
JUEE01000110
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
546
620
+
Gly
CCC
[ENA]
¡û
>W1511644702
LDXJ01000015
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
896
822
-
Gly
GCC
[ENA]
¡û
>W1511646031
LDZY01000021
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
3743
3817
+
Gly
GCC
[ENA]
¡û
>W1511646042
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
5083
5157
+
Gly
GCC
[ENA]
¡û
>W11181363
AGJA01000015
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
5209
5283
+
Gly
GCC
[ENA]
¡û
>W11181419
AGJB01000026
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
836
762
-
Gly
GCC
[ENA]
¡û
>C121005932
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
108297
108371
+
Gly
GCC
[Ensembl]
¡û
>C121005944
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
117980
118054
+
Gly
GCC
[Ensembl]
¡û
>C121011411
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
161407
161481
+
Gly
GCC
[Ensembl]
¡û
>C121011431
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2107149
2107223
+
Gly
GCC
[Ensembl]
¡û
>C121011446
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2108811
2108885
+
Gly
GCC
[Ensembl]
¡û
>C121014783
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
112669
112743
+
Gly
GCC
[Ensembl]
¡û
>C121014849
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
103619
103693
+
Gly
GCC
[Ensembl]
¡û
>C121014861
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
114221
114295
+
Gly
GCC
[Ensembl]
¡û
>C123000243
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
102291
102365
+
Gly
GCC
[Ensembl]
¡û
>C123000245
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
3015076
3015002
-
Gly
GCC
[Ensembl]
¡û
>W121036122
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
124805
124879
+
Gly
GCC
[ENA]
¡û
>W121007256
AFZX01000006
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
4329
4403
+
Gly
GCC
[ENA]
¡û
>W121010360
AGJE01000013
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
83141
83067
-
Gly
GCC
[ENA]
¡û
>W121010373
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
2759
2833
+
Gly
GCC
[ENA]
¡û
>W121010477
AGJG01000031
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
42404
42330
-
Gly
GCC
[ENA]
¡û
>W121010492
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
3395
3469
+
Gly
GCC
[ENA]
¡û
>W121010531
AGJH01000017
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
58569
58495
-
Gly
GCC
[ENA]
¡û
>W121010551
AGJH01000057
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
817
743
-
Gly
GCC
[ENA]
¡û
>W121036133
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
135019
135093
+
Gly
GCC
[ENA]
¡û
>C131003220
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
113858
113932
+
Gly
GCC
[Ensembl]
¡û
>C131003238
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1740062
1740136
+
Gly
GCC
[Ensembl]
¡û
>C131003254
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1805524
1805598
+
Gly
GCC
[Ensembl]
¡û
>C131008537
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2085138
2085064
-
Gly
GCC
[Ensembl]
¡û
>C131008549
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2049936
2049862
-
Gly
GCC
[Ensembl]
¡û
>C131008588
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2114926
2114852
-
Gly
GCC
[Ensembl]
¡û
>C131008600
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2079717
2079643
-
Gly
GCC
[Ensembl]
¡û
>W1610752186
LNDB01000017
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
3100
3174
+
Gly
GCC
[ENA]
¡û
>W1610752197
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
896
822
-
Gly
GCC
[ENA]
¡û
>W1610781399
LOCK01000016
Bacillota
Desulfitobacterium hafniense [LOCK]
19695
19769
+
Gly
GCC
[ENA]
¡û
>W1610781426
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
678
604
-
Gly
GCC
[ENA]
¡û
>W1610784650
LOEZ01000081
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
36881
36807
-
Gly
GCC
[ENA]
¡û
>W1730008571
FNCP01000032
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
48954
48880
-
Gly
GCC
[ENA]
¡û
>W1730008572
FNCP01000054
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
1797
1723
-
Gly
GCC
[ENA]
¡û
>W1730010356
FQXJ01000018
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
29252
29326
+
Gly
GCC
[ENA]
¡û
>W1730010357
FQXJ01000036
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
27543
27469
-
Gly
GCC
[ENA]
¡û
>W1730025497
MASS01000047
Bacillota
Desulfosporosinus sp. BG [MASS]
30987
30913
-
Gly
GCC
[ENA]
¡û
>W1730025498
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
6080
6154
+
Gly
GCC
[ENA]
¡û
>W1730030506
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
5719
5793
+
Gly
GCC
[ENA]
¡û
>W1710516500
FNCP01000038
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
4001
4075
+
Gly
GCC
[ENA]
¡û
>W1710516521
FNCP01000059
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
371
445
+
Gly
CCC
[ENA]
¡û
>W1710588905
FQZS01000007
Bacillota
Lutispora thermophila DSM 19022 [FQZS]
139100
139026
-
Gly
GCC
[ENA]
¡û
>W1710588935
FQZS01000016
Bacillota
Lutispora thermophila DSM 19022 [FQZS]
42566
42640
+
Gly
GCC
[ENA]
¡û
>W1710593537
FRDN01000020
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
6329
6403
+
Gly
GCC
[ENA]
¡û
>W1710593547
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
81033
80959
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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