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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339635 (7 seq.)
>W1711049065
LRQG01000092
Bacteroidota
Prevotella corporis [LRQG]
143556
143630
+
Glu
TTC
[ENA]
¡û
>W131236174
AUME01000007
Bacteroidota
Prevotella corporis DSM 18810 [AUME]
98860
98934
+
Glu
TTC
[ENA]
¡û
>WENV180118811
OASD01001105
[OASD] human gut metagenome; ENVO:feces
1177
1249
+
Glu
TTC
[ENA]
¢þ
>WENV180405135
OBSE01001897
[OBSE] human gut metagenome; ENVO:feces
302
374
+
Glu
TTC
[ENA]
¢þ
>WENV180597176
OCPK01006244
[OCPK] human gut metagenome; ENVO:feces
388
316
-
Glu
TTC
[ENA]
¢þ
>W141224816
BAIT01000003
Bacteroidota
Prevotella corporis JCM 8529 [BAIT]
11963
11889
-
Glu
TTC
[ENA]
¡û
>W1610890194
LRQG01000092
Bacteroidota
Prevotella corporis [LRQG]
143556
143630
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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