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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339684 (95 seq.)
>W1711120614
LUGK01000053
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
129888
129814
-
Arg
CCG
[ENA]
¡û
>W1711167786
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
263610
263536
-
Arg
CCG
[ENA]
¡û
>W1711167854
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
263556
263482
-
Arg
CCG
[ENA]
¡û
>W1711185030
LWNA01000066
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
4162
4088
-
Arg
CCG
[ENA]
¡û
>W1711665950
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
1044555
1044481
-
Arg
CCG
[ENA]
¡û
>W1711678785
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
804309
804383
+
Arg
CCG
[ENA]
¡û
>C171048658
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
431452
431526
+
Arg
CCG
-
¡û
>C171074174
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1010323
1010397
+
Arg
CCG
-
¡û
>C171075510
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
1188378
1188452
+
Arg
CCG
-
¡û
>C171075637
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
556417
556343
-
Arg
CCG
-
¡û
>C171075731
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
575369
575295
-
Arg
CCG
-
¡û
>C171075817
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
903033
902959
-
Arg
CCG
-
¡û
>C171081406
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
560612
560538
-
Arg
CCG
-
¡û
>C171089478
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
528317
528243
-
Arg
CCG
-
¡û
>C171116215
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1630877
1630803
-
Arg
CCG
-
¡û
>W131204324
ATBQ01000113
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
4585
4659
+
Arg
CCG
[ENA]
¡û
>C011435
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
539236
539162
-
Arg
CCG
[Ensembl]
¡û
>C011590
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
533442
533368
-
Arg
CCG
[Ensembl]
¡û
>W141037918
ALPY01000066
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
27314
27240
-
Arg
CCG
[ENA]
¡û
>WENV181660376
OGOF01018345
[OGOF] human gut metagenome; faeces
217
288
+
Arg
CCG
[ENA]
¢þ
>WENV181723456
OGPW01006541
[OGPW] human gut metagenome; faeces
4316
4387
+
Arg
CCG
[ENA]
¢þ
>WENV181733959
OGQE01034636
[OGQE] human gut metagenome; faeces
121
50
-
Arg
CCG
[ENA]
¢þ
>WENV181747348
OGQN01022539
[OGQN] human gut metagenome; faeces
1944
2015
+
Arg
CCG
[ENA]
¢þ
>WENV182293829
OHWC01018805
[OHWC] human gut metagenome; feces
1191
1120
-
Arg
CCG
[ENA]
¢þ
>W141227999
BALP01000002
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
49427
49353
-
Arg
CCG
[ENA]
¡û
>W141228440
BALY01000004
Bacillota
Lactobacillus hamsteri JCM 6256 [BALY]
60
131
+
Arg
CCG
[ENA]
¡û
>WENV182370030
OICS01000949
[OICS] human gut metagenome; feces
7398
7327
-
Arg
CCG
[ENA]
¢þ
>WENV182381826
OIDR01000246
[OIDR] human gut metagenome; feces
17739
17668
-
Arg
CCG
[ENA]
¢þ
>W141246027
CALZ01000014
Bacillota
Lactobacillus equicursoris 66c [CALZ]
9327
9253
-
Arg
CCG
[ENA]
¡û
>W141246124
CAMA01000105
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
7351
7277
-
Arg
CCG
[ENA]
¡û
>W141264127
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
710102
710028
-
Arg
CCG
[ENA]
¡û
>W141264920
CCET01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
499601
499527
-
Arg
CCG
[ENA]
¡û
>W141265004
CCEU01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
493810
493736
-
Arg
CCG
[ENA]
¡û
>WENV183122626
OLNW01000003
[OLNW] human gut metagenome; faeces
149664
149735
+
Arg
CCG
[ENA]
¢þ
>WENV183167033
OLOY01020333
[OLOY] human gut metagenome; faeces
430
501
+
Arg
CCG
[ENA]
¢þ
>WENV183772374
PPYF01016792
[PPYF] human gut metagenome; stool from patient with Crohn's disease
18735
18664
-
Arg
CCG
[ENA]
¢þ
>WENV183785825
PPYF01298390
[PPYF] human gut metagenome; stool from patient with Crohn's disease
159887
159816
-
Arg
CCG
[ENA]
¢þ
>C181025024
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
523381
523310
-
Arg
CCG
-
¡û
>C181074572
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
897299
897228
-
Arg
CCG
-
¡û
>C181076100
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
666923
666852
-
Arg
CCG
-
¡û
>C181221132
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
526316
526245
-
Arg
CCG
-
¡û
>C191063467
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
646968
646897
-
Arg
CCG
-
¡û
>C191089957
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
432347
432418
+
Arg
CCG
-
¡û
>C191224743
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
592398
592327
-
Arg
CCG
-
¡û
>W09101742
AAGQ01000006
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
33526
33600
+
Arg
CCG
[ENA]
¡û
>W09123234
ACGU01000037
Bacillota
Lactobacillus ultunensis DSM 16047 [ACGU]
20373
20300
-
Arg
CCG
[ENA]
¡û
>W1910180830
BJLK01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3376 [BJLK]
134963
134892
-
Arg
CCG
[ENA]
¡û
>W1910180926
BJLM01000053
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
4527
4598
+
Arg
CCG
[ENA]
¡û
>W1910180982
BJLO01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
4923
4994
+
Arg
CCG
[ENA]
¡û
>W1910182492
BJMY01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
260715
260644
-
Arg
CCG
[ENA]
¡û
>W1910186276
CCDS01000004
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
48262
48191
-
Arg
CCG
[ENA]
¡û
>W1910186339
CCDT01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
148206
148277
+
Arg
CCG
[ENA]
¡û
>W1910186419
CCDU01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
150693
150764
+
Arg
CCG
[ENA]
¡û
>W1911631615
PUFG01000042
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
27642
27571
-
Arg
CCG
[ENA]
¡û
>W1911702048
QNXB01000001
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
150111
150182
+
Arg
CCG
[ENA]
¡û
>W1810000532
BEWJ01000057
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
2880
2809
-
Arg
CCG
[ENA]
¡û
>W1810190867
PKKE01000001
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
29196
29267
+
Arg
CCG
[ENA]
¡û
>W1810252685
PQGL01000026
Bacillota
Lactobacillus sp. HT06-2 [PQGL]
27935
27862
-
Arg
CCG
[ENA]
¡û
>W1810445110
PZKI01000001
Bacillota
Lactobacillus delbrueckii AVK [PZKI]
270400
270329
-
Arg
CCG
[ENA]
¡û
>W1810744643
QOVB01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MBT 92059 [QOVB]
187887
187958
+
Arg
CCG
[ENA]
¡û
>W10124048
AEAT01000135
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
30384
30310
-
Arg
CCG
[ENA]
¡û
>C11112507
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
531166
531092
-
Arg
CCG
[Ensembl]
¡û
>C11112605
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
582995
582921
-
Arg
CCG
[Ensembl]
¡û
>W11130885
AEAT01000135
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
30384
30310
-
Arg
CCG
[ENA]
¡û
>W1511510268
JXRV01000022
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
97162
97088
-
Arg
CCG
[ENA]
¡û
>W11152252
AEXU01000128
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
55173
55099
-
Arg
CCG
[ENA]
¡û
>W1511694241
LGAS01000023
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
55771
55697
-
Arg
CCG
[ENA]
¡û
>W1511698295
LGHR01000007
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
217362
217288
-
Arg
CCG
[ENA]
¡û
>C161057634
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
544122
544048
-
Arg
CCG
[Ensembl]
¡û
>W121009766
AGFO01000008
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
115611
115537
-
Arg
CCG
[ENA]
¡û
>W121010044
AGHW01000011
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
188651
188577
-
Arg
CCG
[ENA]
¡û
>W1610032312
AYZN01000001
Bacillota
Lactobacillus pasteurii DSM 23907 = CRBIP 24.76 [AYZN]
497798
497871
+
Arg
CCG
[ENA]
¡û
>W1610033072
AZCR01000003
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
25630
25704
+
Arg
CCG
[ENA]
¡û
>W1610033710
AZDE01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
35370
35444
+
Arg
CCG
[ENA]
¡û
>W1610034483
AZDU01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
74254
74328
+
Arg
CCG
[ENA]
¡û
>W1610036636
AZFL01000001
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
55744
55670
-
Arg
CCG
[ENA]
¡û
>W1610037819
AZGI01000003
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
115
186
+
Arg
CCG
[ENA]
¡û
>W1610044400
BBAN01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
265406
265332
-
Arg
CCG
[ENA]
¡û
>W1610045817
BBBW01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
74142
74216
+
Arg
CCG
[ENA]
¡û
>W1610120861
CZPS01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
149609
149683
+
Arg
CCG
[ENA]
¡û
>W1610502768
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
309476
309403
-
Arg
CCG
[ENA]
¡û
>W1610527960
JQAV01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
149832
149906
+
Arg
CCG
[ENA]
¡û
>W1610529653
JQCG01000003
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
68853
68927
+
Arg
CCG
[ENA]
¡û
>W1610931811
LUGK01000053
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
129888
129814
-
Arg
CCG
[ENA]
¡û
>W1610977855
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
263610
263536
-
Arg
CCG
[ENA]
¡û
>W1610977923
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
263556
263482
-
Arg
CCG
[ENA]
¡û
>W1710030344
AZCR01000003
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
25630
25704
+
Arg
CCG
[ENA]
¡û
>W1710030888
AZDE01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
35370
35444
+
Arg
CCG
[ENA]
¡û
>W1710031610
AZDU01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
74254
74328
+
Arg
CCG
[ENA]
¡û
>W1710033675
AZFL01000001
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
55744
55670
-
Arg
CCG
[ENA]
¡û
>W1710034858
AZGI01000003
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
115
186
+
Arg
CCG
[ENA]
¡û
>W1710042658
BBBW01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
74142
74216
+
Arg
CCG
[ENA]
¡û
>W1710123565
CZPS01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
149609
149683
+
Arg
CCG
[ENA]
¡û
>W1710496167
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
309476
309403
-
Arg
CCG
[ENA]
¡û
>W1710631243
JQCG01000003
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
68853
68927
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK