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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339717 (51 seq.)
>W1711170108
LWAE01000002
Bacillota
Clostridium magnum DSM 2767 [LWAE]
16162
16236
+
Glu
TTC
[ENA]
¡û
>W1711170135
LWAE01000008
Bacillota
Clostridium magnum DSM 2767 [LWAE]
59919
59993
+
Glu
TTC
[ENA]
¡û
>C171077647
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
181224
181298
+
Glu
TTC
-
¡û
>C171077650
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
181572
181646
+
Glu
TTC
-
¡û
>w025874
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2067955
2068029
+
Glu
TTC
[ENA]
¡û
>w025871
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2067605
2067679
+
Glu
TTC
[ENA]
¡û
>WENV180144529
OAUA01029519
[OAUA] human gut metagenome; faeces
152
226
+
Glu
TTC
[ENA]
¢þ
>WENV180243767
OBDJ01095355
[OBDJ] human gut metagenome; human gut
221
147
-
Glu
TTC
[ENA]
¢þ
>WENV181464570
OGEP01001496
[OGEP] metagenome; Human gut stool
24845
24771
-
Glu
TTC
[ENA]
¢þ
>WENV181711271
OGPO01026280
[OGPO] human gut metagenome; faeces
358
432
+
Glu
TTC
[ENA]
¢þ
>C08003346
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
87845
87919
+
Glu
TTC
[Ensembl]
¡û
>C08003349
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
88195
88269
+
Glu
TTC
[Ensembl]
¡û
>WENV183708426
PDWI01015998
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7223
7297
+
Glu
TTC
[ENA]
¢þ
>WENV183712355
PDWI01097057
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1704
1778
+
Glu
TTC
[ENA]
¢þ
>WENV183717921
PDWJ01001980
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
18822
18748
-
Glu
TTC
[ENA]
¢þ
>W09133457
ACPD01000003
Bacillota
Clostridium cellulovorans 743B [ACPD]
151109
151035
-
Glu
TTC
[ENA]
¡û
>W09133502
ACPD01000109
Bacillota
Clostridium cellulovorans 743B [ACPD]
13
87
+
Glu
TTC
[ENA]
¡û
>C09103259
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
87845
87919
+
Glu
TTC
[Ensembl]
¡û
>C09103262
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
88195
88269
+
Glu
TTC
[Ensembl]
¡û
>W1910637538
LQGW01000035
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
63434
63360
-
Glu
TTC
[ENA]
¡û
>W1910637541
LQGW01000035
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
63174
63100
-
Glu
TTC
[ENA]
¡û
>W1510060481
CCXI01000144
Bacillota
Clostridium polynesiense MS1 [CCXI]
6689
6615
-
Glu
TTC
[ENA]
¡û
>W1510060484
CCXI01000144
Bacillota
Clostridium polynesiense MS1 [CCXI]
6434
6360
-
Glu
TTC
[ENA]
¡û
>W1510060497
CCXI01000159
Bacillota
Clostridium polynesiense MS1 [CCXI]
40831
40757
-
Glu
TTC
[ENA]
¡û
>C10102754
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
104243
104317
+
Glu
TTC
[Ensembl]
¡û
>C10102789
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
5226431
5226357
-
Glu
TTC
[Ensembl]
¡û
>C10102792
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
5226138
5226064
-
Glu
TTC
[Ensembl]
¡û
>W11184308
BABR01000080
Bacillota
Clostridium cellulovorans 743B [BABR]
4626
4552
-
Glu
TTC
[ENA]
¡û
>W1610061673
BCMV01000001
Bacillota
Sarcina ventriculi [BCMV]
43024
43098
+
Glu
TTC
[ENA]
¡û
>W1610061676
BCMV01000001
Bacillota
Sarcina ventriculi [BCMV]
43277
43351
+
Glu
TTC
[ENA]
¡û
>W1610061727
BCMV01000065
Bacillota
Sarcina ventriculi [BCMV]
76488
76414
-
Glu
TTC
[ENA]
¡û
>W1610061771
BCMW01000015
Bacillota
Sarcina ventriculi [BCMW]
256
182
-
Glu
TTC
[ENA]
¡û
>W1610061804
BCMW01000026
Bacillota
Sarcina ventriculi [BCMW]
138
212
+
Glu
TTC
[ENA]
¡û
>W1610101356
CYZR01000003
Bacillota
Sarcina ventriculi [CYZR]
123
197
+
Glu
TTC
[ENA]
¡û
>W1610101357
CYZR01000004
Bacillota
Sarcina ventriculi [CYZR]
274541
274467
-
Glu
TTC
[ENA]
¡û
>W1610101360
CYZR01000004
Bacillota
Sarcina ventriculi [CYZR]
274289
274215
-
Glu
TTC
[ENA]
¡û
>W1610979260
LWAE01000002
Bacillota
Clostridium magnum DSM 2767 [LWAE]
16162
16236
+
Glu
TTC
[ENA]
¡û
>W1610979287
LWAE01000008
Bacillota
Clostridium magnum DSM 2767 [LWAE]
59919
59993
+
Glu
TTC
[ENA]
¡û
>W1710059338
BCMV01000001
Bacillota
Sarcina ventriculi [BCMV]
43024
43098
+
Glu
TTC
[ENA]
¡û
>W1710059341
BCMV01000001
Bacillota
Sarcina ventriculi [BCMV]
43277
43351
+
Glu
TTC
[ENA]
¡û
>W1710059392
BCMV01000065
Bacillota
Sarcina ventriculi [BCMV]
76488
76414
-
Glu
TTC
[ENA]
¡û
>W1710059436
BCMW01000015
Bacillota
Sarcina ventriculi [BCMW]
256
182
-
Glu
TTC
[ENA]
¡û
>W1710059469
BCMW01000026
Bacillota
Sarcina ventriculi [BCMW]
138
212
+
Glu
TTC
[ENA]
¡û
>W1710104111
CYZR01000003
Bacillota
Sarcina ventriculi [CYZR]
123
197
+
Glu
TTC
[ENA]
¡û
>W1710104112
CYZR01000004
Bacillota
Sarcina ventriculi [CYZR]
274541
274467
-
Glu
TTC
[ENA]
¡û
>W1710104115
CYZR01000004
Bacillota
Sarcina ventriculi [CYZR]
274289
274215
-
Glu
TTC
[ENA]
¡û
>W1710586730
FQXL01000007
Bacillota
Clostridium magnum DSM 2767 [FQXL]
24677
24751
+
Glu
TTC
[ENA]
¡û
>W1710586748
FQXL01000022
Bacillota
Clostridium magnum DSM 2767 [FQXL]
105929
105855
-
Glu
TTC
[ENA]
¡û
>W1710588669
FQZO01000002
Bacillota
Clostridium amylolyticum [FQZO]
538497
538423
-
Glu
TTC
[ENA]
¡û
>W1710588672
FQZO01000002
Bacillota
Clostridium amylolyticum [FQZO]
538244
538170
-
Glu
TTC
[ENA]
¡û
>W1710588728
FQZO01000015
Bacillota
Clostridium amylolyticum [FQZO]
220
294
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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