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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339731 (60 seq.)
>W1710854712
LLXS01000020
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
23823
23897
+
Gln
CTG
[ENA]
¡û
>W1710854713
LLXS01000020
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
24012
24086
+
Gln
CTG
[ENA]
¡û
>W1710868940
LMJN01000001
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
697891
697965
+
Gln
CTG
[ENA]
¡û
>W1711220364
LXQJ01000041
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
131972
131898
-
Gln
CTG
[ENA]
¡û
>W1711386592
MEFO01000025
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
27375
27449
+
Gln
CTG
[ENA]
¡û
>W1711387237
MEGL01000003
Gammaproteobacteria
Rhodanobacter sp. SCN 68-63 [MEGL]
27204
27130
-
Gln
CTG
[ENA]
¡û
>W1711424145
MIDV01000039
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_69_10 [MIDV]
50162
50088
-
Gln
CTG
[ENA]
¡û
>W1711424197
MIDW01000072
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
466
392
-
Gln
CTG
[ENA]
¡û
>W1711506476
MKWK01000027
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
78093
78167
+
Gln
CTG
[ENA]
¡û
>C171050501
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
2814642
2814568
-
Gln
CTG
-
¡û
>C171050502
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
2814454
2814380
-
Gln
CTG
-
¡û
>W131235357
AULN01000011
Gammaproteobacteria
Luteimonas mephitis DSM 12574 [AULN]
227801
227727
-
Gln
CTG
[ENA]
¡û
>W131226653
AUEN01000004
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
367993
368067
+
Gln
CTG
[ENA]
¡û
>WENV180040731
LLBZ010009617
[LLBZ] soil metagenome; soil from tomato rhizosphere
223
149
-
Gln
CTG
[ENA]
¢þ
>WENV181166683
OEIU01001131
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
14606
14680
+
Gln
CTG
[ENA]
¢þ
>WENV181732305
OGQD01022941
[OGQD] human gut metagenome; faeces
1317
1243
-
Gln
CTG
[ENA]
¢þ
>WENV183058305
OLHP01004571
[OLHP] seawater metagenome; Sea water
170
96
-
Gln
CTG
[ENA]
¢þ
>WENV183725899
PJQF01033259
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
162
88
-
Gln
CTG
[ENA]
¢þ
>WENV183728909
PJTQ01001096
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
6742
6816
+
Gln
CTG
[ENA]
¢þ
>WENV183747908
PPFU01002732
[PPFU] hypolithon metagenome; Antarctic Hypolithon
67549
67475
-
Gln
CTG
[ENA]
¢þ
>WENV170661295
JXWU01153362
[JXWU] soil metagenome; rice field; organic control Plot
208
282
+
Gln
CTG
[ENA]
¢þ
>WENV170707599
LNAP01026719
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5403
5477
+
Gln
CTG
[ENA]
¢þ
>WENV170707882
LNAP01037794
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
319
393
+
Gln
CTG
[ENA]
¢þ
>WENV170966771
MTEY01008029
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
1302
1228
-
Gln
CTG
[ENA]
¢þ
>C181039135
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
3134380
3134454
+
Gln
CTG
-
¡û
>C181080835
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
3309376
3309302
-
Gln
CTG
-
¡û
>C191139359
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
660218
660292
+
Gln
CTG
-
¡û
>C191165664
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
654501
654575
+
Gln
CTG
-
¡û
>W1911162510
NPZB01000001
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
919745
919819
+
Gln
CTG
[ENA]
¡û
>W1911218348
NRQR01000012
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
54789
54863
+
Gln
CTG
[ENA]
¡û
>W1911283697
NTJF01000011
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
47533
47607
+
Gln
CTG
[ENA]
¡û
>W1911283742
NTJG01000012
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
55471
55397
-
Gln
CTG
[ENA]
¡û
>W1911283786
NTJH01000010
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
55570
55496
-
Gln
CTG
[ENA]
¡û
>W1911283816
NTJI01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
845251
845177
-
Gln
CTG
[ENA]
¡û
>W1911405242
NWQL01000006
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
84841
84915
+
Gln
CTG
[ENA]
¡û
>W1810914474
QVPD01000006
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
115310
115236
-
Gln
CTG
[ENA]
¡û
>C11118130
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
360959
361033
+
Gln
CTG
[Ensembl]
¡û
>W11172528
AFSN01000006
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [AFSN]
173301
173375
+
Gln
CTG
[ENA]
¡û
>C121005559
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
302746
302820
+
Gln
CTG
[Ensembl]
¡û
>C161047155
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
3487524
3487598
+
Gln
CTG
[Ensembl]
¡û
>W1610042786
BAZI01000183
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4848
4774
-
Gln
CTG
[ENA]
¡û
>W1610042787
BAZI01000183
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4659
4585
-
Gln
CTG
[ENA]
¡û
>W121071223
AJXS01000458
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
9621
9695
+
Gln
CTG
[ENA]
¡û
>W1610547636
JUKH01000004
Gammaproteobacteria
Luteimonas abyssi [JUKH]
141240
141314
+
Gln
CTG
[ENA]
¡û
>W1610586827
LDJH01000017
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
86441
86367
-
Gln
CTG
[ENA]
¡û
>W1610587049
LDJL01000009
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
71713
71787
+
Gln
CTG
[ENA]
¡û
>W1610587274
LDJO01000075
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
23490
23564
+
Gln
CTG
[ENA]
¡û
>W1610716989
LLXS01000020
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
23823
23897
+
Gln
CTG
[ENA]
¡û
>W1610716990
LLXS01000020
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
24012
24086
+
Gln
CTG
[ENA]
¡û
>W1611004836
LXQJ01000041
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
131972
131898
-
Gln
CTG
[ENA]
¡û
>WENV080116
AATO01006377
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
468
392
-
Gln
CTG
[ENA]
>W1710039946
BAZI01000183
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4848
4774
-
Gln
CTG
[ENA]
¡û
>W1710039947
BAZI01000183
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4659
4585
-
Gln
CTG
[ENA]
¡û
>W1710527380
FNKZ01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
961889
961963
+
Gln
CTG
[ENA]
¡û
>W1710544547
FOAX01000001
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
93400
93474
+
Gln
CTG
[ENA]
¡û
>W1710567345
FOSR01000003
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
110575
110649
+
Gln
CTG
[ENA]
¡û
>W1710650881
JUKH01000004
Gammaproteobacteria
Luteimonas abyssi [JUKH]
141240
141314
+
Gln
CTG
[ENA]
¡û
>W1710705957
LDJH01000017
Gammaproteobacteria
Stenotrophomonas koreensis [LDJH]
86441
86367
-
Gln
CTG
[ENA]
¡û
>W1710706179
LDJL01000009
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
71713
71787
+
Gln
CTG
[ENA]
¡û
>W1710706404
LDJO01000075
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
23490
23564
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK