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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339743 (76 seq.)
>W1710809593
LKEQ01000006
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
256742
256670
-
Cys
GCA
[ENA]
¡û
>W1711055063
LRUH01000049
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
8678
8750
+
Cys
GCA
[ENA]
¡û
>W1711088435
LSYX01000068
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
33082
33010
-
Cys
GCA
[ENA]
¡û
>W1711088486
LSYY01000126
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
41560
41632
+
Cys
GCA
[ENA]
¡û
>W1711258826
LYUV01000042
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
3966
3894
-
Cys
GCA
[ENA]
¡û
>W1711258859
LYUW01000041
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
3966
3894
-
Cys
GCA
[ENA]
¡û
>W1711258876
LYUX01000004
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
8701
8773
+
Cys
GCA
[ENA]
¡û
>W1711258923
LYUY01000029
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
4227
4155
-
Cys
GCA
[ENA]
¡û
>W1711466327
MJMG01000006
Alphaproteobacteria
Wolbachia pipientis [MJMG]
84572
84500
-
Cys
GCA
[ENA]
¡û
>W1711745722
MUJL01000116
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
14460
14532
+
Cys
GCA
[ENA]
¡û
>W1711745748
MUJM01000085
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
18299
18371
+
Cys
GCA
[ENA]
¡û
>W131052829
AMZJ01000071
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
18556
18628
+
Cys
GCA
[ENA]
¡û
>W131242653
CAOH01000085
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
37121
37193
+
Cys
GCA
[ENA]
¡û
>W131243123
CAOU02000038
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
40689
40761
+
Cys
GCA
[ENA]
¡û
>C008214
CP000107
Alphaproteobacteria
Ehrlichia canis str. Jake [CP000107]
75792
75718
-
Cys
GCA
[Ensembl]
¡û
>C026836
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
1186296
1186367
+
Cys
GCA
[Ensembl]
¡û
>w016794
AAQP01000024
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila willistoni of Drosophila willistoni TSC#14030-0811.24 [AAQP]
3471
3545
+
Cys
GCA
[ENA]
¡û
>w005428
AAGC01000242
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans [AAGC]
644
718
+
Cys
GCA
[ENA]
¡û
>w005396
AAGB01000014
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae [AAGB]
11637
11711
+
Cys
GCA
[ENA]
¡û
>W141065614
AQQE01000005
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
13121
13193
+
Cys
GCA
[ENA]
¡û
>WENV181405251
OGCC01001702
[OGCC] insect metagenome; haemolymph
1197
1269
+
Cys
GCA
[ENA]
¢þ
>WENV181405277
OGCD01000013
[OGCD] insect metagenome; haemolymph
1000
928
-
Cys
GCA
[ENA]
¢þ
>WENV181406119
OGCF01003560
[OGCF] insect metagenome; haemolymph
144
72
-
Cys
GCA
[ENA]
¢þ
>W141240238
CAGB01000163
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
12219
12291
+
Cys
GCA
[ENA]
¡û
>C08011407
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
1153014
1153086
+
Cys
GCA
[Ensembl]
¡û
>C181017556
CP015510
Alphaproteobacteria
Wolbachia endosymbiont of Folsomia candida Berlin [CP015510]
1007082
1007154
+
Cys
GCA
-
¡û
>C181122142
CP025749
Alphaproteobacteria
Ehrlichia canis YZ-1 [CP025749]
75849
75773
-
Cys
GCA
-
¡û
>C191074336
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
1156749
1156677
-
Cys
GCA
-
¡û
>C191123101
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
534311
534383
+
Cys
GCA
-
¡û
>C191123131
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
214549
214621
+
Cys
GCA
-
¡û
>C191123165
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
214551
214623
+
Cys
GCA
-
¡û
>C191188712
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
209624
209696
+
Cys
GCA
-
¡û
>W09101324
AAEJ01000001
Alphaproteobacteria
Ehrlichia canis str. Jake [AAEJ]
629597
629673
+
Cys
GCA
[ENA]
¡û
>W09113845
ABZA01000001
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
378253
378325
+
Cys
GCA
[ENA]
¡û
>W09121824
ACFP01000242
Alphaproteobacteria
Wolbachia endosymbiont of Muscidifurax uniraptor [ACFP]
4455
4383
-
Cys
GCA
[ENA]
¡û
>W141812292
JQAM01000036
Alphaproteobacteria
Wolbachia pipientis [JQAM]
96103
96175
+
Cys
GCA
[ENA]
¡û
>W1910213460
FMKF01000024
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
1008
936
-
Cys
GCA
[ENA]
¡û
>C09111266
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
1306976
1307048
+
Cys
GCA
[Ensembl]
¡û
>C141005759
CP006618
Alphaproteobacteria
Anaplasma phagocytophilum str. Dog2 [CP006618]
1332779
1332851
+
Cys
GCA
[Ensembl]
¡û
>W1910753970
MKIF01000098
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
15980
16052
+
Cys
GCA
[ENA]
¡û
>W1910759050
MLZJ01000172
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
3691
3619
-
Cys
GCA
[ENA]
¡û
>W1910760297
MNCG01000171
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
3691
3619
-
Cys
GCA
[ENA]
¡û
>W1910794353
MRWX01000007
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
19024
18952
-
Cys
GCA
[ENA]
¡û
>W1911239470
NSDR01000103
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
2785
2857
+
Cys
GCA
[ENA]
¡û
>W1911239508
NSDS01000109
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
9976
9904
-
Cys
GCA
[ENA]
¡û
>W1911239524
NSDT01000057
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
40465
40537
+
Cys
GCA
[ENA]
¡û
>W1911281129
NTHL01000088
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
41328
41400
+
Cys
GCA
[ENA]
¡û
>W1911412160
NWVH01000061
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
3054
2982
-
Cys
GCA
[ENA]
¡û
>W1911412197
NWVI01000086
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
3145
3073
-
Cys
GCA
[ENA]
¡û
>W1911412233
NWVJ01000047
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVJ]
294
222
-
Cys
GCA
[ENA]
¡û
>W1911412287
NWVK01000080
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVK]
16969
17041
+
Cys
GCA
[ENA]
¡û
>W1911545120
OUNE01000107
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
18622
18550
-
Cys
GCA
[ENA]
¡û
>W1911545157
OUNF01000374
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus floccissimus WBAF (OUNF) of Aleurodicus floccissimus WBAF [OUNF]
9480
9552
+
Cys
GCA
[ENA]
¡û
>W1911702677
QOHL01000021
Alphaproteobacteria
Ehrlichia minasensis B11 [QOHL]
10783
10859
+
Cys
GCA
[ENA]
¡û
>W1810758329
QPIP01000003
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
23299
23227
-
Cys
GCA
[ENA]
¡û
>C151102212
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
1186259
1186331
+
Cys
GCA
[Ensembl]
¡û
>W1510071301
CDGH01000058
Alphaproteobacteria
Ehrlichia minasensis UFMG-EV [CDGH]
44063
43987
-
Cys
GCA
[ENA]
¡û
>W1510562590
CTEH01000001
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
106179
106251
+
Cys
GCA
[ENA]
¡û
>W1511183961
JMCJ01000388
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus of Dactylopius coccus wCoc1 [JMCJ]
438
510
+
Cys
GCA
[ENA]
¡û
>W1511183985
JMCJ01000982
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus of Dactylopius coccus wCoc1 [JMCJ]
2290
2218
-
Cys
GCA
[ENA]
¡û
>W1511536215
JYPC01000019
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
1942
2014
+
Cys
GCA
[ENA]
¡û
>W1511574476
LANX01000001
Alphaproteobacteria
Candidatus Neoehrlichia lotoris lotoris str. RAC413 [LANX]
850111
850183
+
Cys
GCA
[ENA]
¡û
>W11145954
AERW01000259
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
1053
1125
+
Cys
GCA
[ENA]
¡û
>W11185728
CACK01000089
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
15794
15722
-
Cys
GCA
[ENA]
¡û
>C131009152
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
1212592
1212664
+
Cys
GCA
[Ensembl]
¡û
>C131009118
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
720807
720879
+
Cys
GCA
[Ensembl]
¡û
>W1610503050
FLMD01000105
Alphaproteobacteria
Anaplasma phagocytophilum C5 [FLMD]
2781
2853
+
Cys
GCA
[ENA]
¡û
>W1610503057
FLME01000009
Alphaproteobacteria
Anaplasma phagocytophilum RD1 [FLME]
13581
13509
-
Cys
GCA
[ENA]
¡û
>W1610673699
LKEQ01000006
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
256742
256670
-
Cys
GCA
[ENA]
¡û
>W1610896109
LRUH01000049
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
8678
8750
+
Cys
GCA
[ENA]
¡û
>W1610922974
LSYX01000068
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
33082
33010
-
Cys
GCA
[ENA]
¡û
>W1610923025
LSYY01000126
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
41560
41632
+
Cys
GCA
[ENA]
¡û
>W1611021091
LYUV01000042
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
3966
3894
-
Cys
GCA
[ENA]
¡û
>W1611021124
LYUW01000041
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
3966
3894
-
Cys
GCA
[ENA]
¡û
>W1611021141
LYUX01000004
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
8701
8773
+
Cys
GCA
[ENA]
¡û
>W1611021188
LYUY01000029
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
4227
4155
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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