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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339777 (42 seq.)
>A171001140
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
3142855
3142783
-
Ala
CGC
-
¡û
>A171001300
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
2581089
2581161
+
Ala
CGC
-
¡û
>A171003086
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
887816
887888
+
Ala
CGC
-
¡û
>A171003180
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2044477
2044406
-
Ala
CGC
-
¡û
>A171003963
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
2741793
2741722
-
Ala
CGC
-
¡û
>A171006980
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2107211
2107139
-
Ala
CGC
-
¡û
>WENV170680535
LFCJ01013865
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5396
5322
-
Ala
CGC
[ENA]
¢þ
>W1910226680
FMZP01000003
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
207361
207433
+
Ala
CGC
[ENA]
¡û
>W1910226999
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
545867
545795
-
Ala
CGC
[ENA]
¡û
>W1910227134
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
479251
479179
-
Ala
CGC
[ENA]
¡û
>W1910229328
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
1067831
1067759
-
Ala
CGC
[ENA]
¡û
>W1910229757
FODV01000003
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
55275
55204
-
Ala
CGC
[ENA]
¡û
>W1910229815
FOFD01000004
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
176948
177019
+
Ala
CGC
[ENA]
¡û
>W1910230460
FORO01000038
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
17347
17275
-
Ala
CGC
[ENA]
¡û
>W1910230804
FOZK01000002
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
467300
467228
-
Ala
CGC
[ENA]
¡û
>W1910340502
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
518434
518362
-
Ala
CGC
[ENA]
¡û
>W1910340559
FTNR01000012
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
128716
128787
+
Ala
CGC
[ENA]
¡û
>W1910572698
JNCS01000001
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
284182
284111
-
Ala
CGC
[ENA]
¡û
>W1910583030
JXAN01000109
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
9645
9716
+
Ala
CGC
[ENA]
¡û
>W1910657577
MASN01000043
Euryarchaeota
Natrialba sp. SSL1 [MASN]
15212
15141
-
Ala
CGC
[ENA]
¡û
>W1911433996
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2498840
2498769
-
Ala
CGC
[ENA]
¡û
>W1911572234
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
2235656
2235585
-
Ala
CGC
[ENA]
¡û
>W1911591351
PKKI01000059
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
706
634
-
Ala
CGC
[ENA]
¡û
>W1911717976
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
730207
730278
+
Ala
CGC
[ENA]
¡û
>W1610001033
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
714476
714550
+
Ala
CGC
[ENA]
¡û
>W1610004063
AGFZ01000092
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
52045
52117
+
Ala
CGC
[ENA]
¡û
>W1610004105
AGIM01000011
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
89562
89636
+
Ala
CGC
[ENA]
¡û
>W1610005384
AJVG01000019
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
3883
3812
-
Ala
CGC
[ENA]
¡û
>W1610011719
AOHS01000029
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
142493
142419
-
Ala
CGC
[ENA]
¡û
>W1610012050
AOHZ01000074
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
1789
1863
+
Ala
CGC
[ENA]
¡û
>W1610012187
AOIC01000120
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
17257
17183
-
Ala
CGC
[ENA]
¡û
>W1610012306
AOII01000071
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
14283
14209
-
Ala
CGC
[ENA]
¡û
>W1610012340
AOIJ01000044
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
52588
52517
-
Ala
CGC
[ENA]
¡û
>W1610012409
AOIK01000042
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
182687
182758
+
Ala
CGC
[ENA]
¡û
>W1610012488
AOIM01000038
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
42226
42154
-
Ala
CGC
[ENA]
¡û
>W1610012533
AOIN01000096
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
12903
12974
+
Ala
CGC
[ENA]
¡û
>W1610014364
AOLY01000005
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
247701
247772
+
Ala
CGC
[ENA]
¡û
>W1610014465
AOMA01000082
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
51288
51360
+
Ala
CGC
[ENA]
¡û
>W1610018970
AQZY01000004
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
222379
222308
-
Ala
CGC
[ENA]
¡û
>W1610024373
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
1704117
1704046
-
Ala
CGC
[ENA]
¡û
>W1610061936
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
882523
882594
+
Ala
CGC
[ENA]
¡û
>W1610682574
LKND01000033
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
6345
6417
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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