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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339837 (10 seq.)
>A171004024
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
99976
99905
-
Arg
GCG
-
¡û
>A171007340
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
36979
36908
-
Arg
GCG
-
¡û
>A171007371
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1409930
1409859
-
Arg
GCG
-
¡û
>A171007427
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
58079
58008
-
Arg
GCG
-
¡û
>A171007689
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
52831
52758
-
Arg
GCG
-
¡û
>WENV170677312
LDZT01004913
[LDZT] terrestrial metagenome; oil reservoir sample SB1
15949
16020
+
Arg
GCG
[ENA]
¢þ
>W1610006230
AMGN01000019
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
19116
19189
+
Arg
GCG
[ENA]
¡û
>W1610011002
AMPO01000001
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
413762
413689
-
Arg
GCG
[ENA]
¡û
>W1610049142
BBES01000002
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
13413
13342
-
Arg
GCG
[ENA]
¡û
>W1610613866
LGGL01000020
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
15949
16020
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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