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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339840 (22 seq.)
>A171002055
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
97641
97570
-
Val
TAC
-
¡û
>A171002253
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2519593
2519664
+
Val
TAC
-
¡û
>A171002254
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2519762
2519833
+
Val
CAC
-
¡û
>A171003982
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
23054
23127
+
Val
TAC
-
¡û
>A171007321
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
2008443
2008516
+
Val
TAC
-
¡û
>A171007352
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1321824
1321897
+
Val
TAC
-
¡û
>A171007404
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2470080
2470153
+
Val
TAC
-
¡û
>A171007669
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2417314
2417385
+
Val
TAC
-
¡û
>WENV181229676
OFEK01000020
[OFEK] activated sludge metagenome; Anaerobic digester
141891
141964
+
Val
TAC
[ENA]
¢þ
>WENV181230038
OFEK01000212
[OFEK] activated sludge metagenome; Anaerobic digester
46524
46596
+
Val
TAC
[ENA]
¢þ
>WENV170668649
LAHQ01008332
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
912
838
-
Val
TAC
[ENA]
¢þ
>WENV170676679
LDZS01001897
[LDZS] terrestrial metagenome; oil reservoir sample K3
79038
78967
-
Val
TAC
[ENA]
¢þ
>WENV170677309
LDZT01004910
[LDZT] terrestrial metagenome; oil reservoir sample SB1
23500
23427
-
Val
TAC
[ENA]
¢þ
>WENV170678578
LDZU01002623
[LDZU] terrestrial metagenome; oil reservoir sample SB2
488
561
+
Val
TAC
[ENA]
¢þ
>WENV170972422
MTKX01029493
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1048
976
-
Val
TAC
[ENA]
¢þ
>WENV170975571
MTKZ01001330
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
80866
80938
+
Val
TAC
[ENA]
¢þ
>W1910575101
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2362301
2362372
+
Val
TAC
[ENA]
¡û
>W1610006235
AMGN01000028
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
34258
34185
-
Val
TAC
[ENA]
¡û
>W1610010999
AMPO01000001
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
345270
345343
+
Val
TAC
[ENA]
¡û
>W1610049167
BBES01000016
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
27826
27753
-
Val
TAC
[ENA]
¡û
>W1610049168
BBES01000016
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
27655
27582
-
Val
CAC
[ENA]
¡û
>W1610613863
LGGL01000017
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
23500
23427
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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