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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339856 (129 seq.)
>W1711210394
LXID01000005
Bacillota
Enterococcus faecalis [LXID]
19738
19667
-
Trp
CCA
[ENA]
¡û
>W131208942
ATII01000037
Bacillota
Enterococcus faecalis D811610-10 [ATII]
92967
92896
-
Trp
CCA
[ENA]
¡û
>W131010470
AHYN01000003
Bacillota
Enterococcus faecalis V583 [AHYN]
179454
179525
+
Trp
CCA
[ENA]
¡û
>W131012407
AIJH01000011
Bacillota
Enterococcus faecalis B1290 [AIJH]
301235
301164
-
Trp
CCA
[ENA]
¡û
>W131012501
AIJI01000016
Bacillota
Enterococcus faecalis B1327 [AIJI]
148206
148135
-
Trp
CCA
[ENA]
¡û
>W131012532
AIJJ01000007
Bacillota
Enterococcus faecalis B1376 [AIJJ]
305746
305675
-
Trp
CCA
[ENA]
¡û
>W131012575
AIJK01000003
Bacillota
Enterococcus faecalis B1385 [AIJK]
45914
45985
+
Trp
CCA
[ENA]
¡û
>W131012859
AIPS01000037
Bacillota
Enterococcus faecalis B1005 [AIPS]
342714
342643
-
Trp
CCA
[ENA]
¡û
>W131012899
AIPT01000009
Bacillota
Enterococcus faecalis B1138 [AIPT]
13774
13703
-
Trp
CCA
[ENA]
¡û
>W131012966
AIPU01000023
Bacillota
Enterococcus faecalis B1249 [AIPU]
264226
264155
-
Trp
CCA
[ENA]
¡û
>W131013024
AIPV01000017
Bacillota
Enterococcus faecalis B1441 [AIPV]
264540
264469
-
Trp
CCA
[ENA]
¡û
>W131013081
AIPW01000014
Bacillota
Enterococcus faecalis B1505 [AIPW]
305659
305588
-
Trp
CCA
[ENA]
¡û
>W131013135
AIPX01000021
Bacillota
Enterococcus faecalis B1532 [AIPX]
305869
305798
-
Trp
CCA
[ENA]
¡û
>W131013148
AIPY01000005
Bacillota
Enterococcus faecalis B1586 [AIPY]
305900
305829
-
Trp
CCA
[ENA]
¡û
>W131013255
AIPZ01000013
Bacillota
Enterococcus faecalis B1618 [AIPZ]
306331
306260
-
Trp
CCA
[ENA]
¡û
>W131013307
AIQA01000035
Bacillota
Enterococcus faecalis B1623 [AIQA]
305804
305733
-
Trp
CCA
[ENA]
¡û
>W131013364
AIQB01000026
Bacillota
Enterococcus faecalis B1678 [AIQB]
305623
305552
-
Trp
CCA
[ENA]
¡û
>W131013428
AIQC01000020
Bacillota
Enterococcus faecalis B1696 [AIQC]
148206
148135
-
Trp
CCA
[ENA]
¡û
>W131013495
AIQD01000022
Bacillota
Enterococcus faecalis B1719 [AIQD]
305746
305675
-
Trp
CCA
[ENA]
¡û
>W131013545
AIQE01000021
Bacillota
Enterococcus faecalis B1734 [AIQE]
306486
306415
-
Trp
CCA
[ENA]
¡û
>W131013590
AIQF01000016
Bacillota
Enterococcus faecalis B1843 [AIQF]
468884
468813
-
Trp
CCA
[ENA]
¡û
>W131013641
AIQG01000016
Bacillota
Enterococcus faecalis B1851 [AIQG]
264630
264559
-
Trp
CCA
[ENA]
¡û
>W131013693
AIQH01000018
Bacillota
Enterococcus faecalis B1874 [AIQH]
305623
305552
-
Trp
CCA
[ENA]
¡û
>W131013801
AIQJ01000016
Bacillota
Enterococcus faecalis B1933 [AIQJ]
305623
305552
-
Trp
CCA
[ENA]
¡û
>W131013852
AIQK01000016
Bacillota
Enterococcus faecalis B2202 [AIQK]
306552
306481
-
Trp
CCA
[ENA]
¡û
>W131013952
AIQM01000037
Bacillota
Enterococcus faecalis B2211 [AIQM]
305623
305552
-
Trp
CCA
[ENA]
¡û
>W131014009
AIQN01000015
Bacillota
Enterococcus faecalis B2255 [AIQN]
305246
305175
-
Trp
CCA
[ENA]
¡û
>W131014062
AIQO01000038
Bacillota
Enterococcus faecalis B2277 [AIQO]
305623
305552
-
Trp
CCA
[ENA]
¡û
>W131014115
AIQP01000021
Bacillota
Enterococcus faecalis B2391 [AIQP]
148206
148135
-
Trp
CCA
[ENA]
¡û
>W131014167
AIQQ01000017
Bacillota
Enterococcus faecalis B2488 [AIQQ]
305804
305733
-
Trp
CCA
[ENA]
¡û
>W131014229
AIQR01000019
Bacillota
Enterococcus faecalis B2535 [AIQR]
148143
148072
-
Trp
CCA
[ENA]
¡û
>W131014289
AIQS01000020
Bacillota
Enterococcus faecalis B2557 [AIQS]
306109
306038
-
Trp
CCA
[ENA]
¡û
>W131014358
AIQT01000024
Bacillota
Enterococcus faecalis B2593 [AIQT]
305788
305717
-
Trp
CCA
[ENA]
¡û
>W131014402
AIQU01000026
Bacillota
Enterococcus faecalis B2670 [AIQU]
264574
264503
-
Trp
CCA
[ENA]
¡û
>W131014453
AIQV01000021
Bacillota
Enterococcus faecalis B2685 [AIQV]
72738
72667
-
Trp
CCA
[ENA]
¡û
>W131014532
AIQW01000017
Bacillota
Enterococcus faecalis B2687 [AIQW]
305842
305771
-
Trp
CCA
[ENA]
¡û
>W131014590
AIQX01000033
Bacillota
Enterococcus faecalis B2802 [AIQX]
264509
264438
-
Trp
CCA
[ENA]
¡û
>W131014635
AIQY01000017
Bacillota
Enterococcus faecalis B2813 [AIQY]
305870
305799
-
Trp
CCA
[ENA]
¡û
>W131014681
AIQZ01000022
Bacillota
Enterococcus faecalis B2864 [AIQZ]
305897
305826
-
Trp
CCA
[ENA]
¡û
>W131014739
AIRA01000039
Bacillota
Enterococcus faecalis B2867 [AIRA]
264553
264482
-
Trp
CCA
[ENA]
¡û
>W131014785
AIRB01000023
Bacillota
Enterococcus faecalis B2949 [AIRB]
306331
306260
-
Trp
CCA
[ENA]
¡û
>W131014836
AIRC01000019
Bacillota
Enterococcus faecalis B3031 [AIRC]
307141
307070
-
Trp
CCA
[ENA]
¡û
>W131014896
AIRD01000025
Bacillota
Enterococcus faecalis B3042 [AIRD]
305681
305610
-
Trp
CCA
[ENA]
¡û
>W131014946
AIRE01000019
Bacillota
Enterococcus faecalis B3053 [AIRE]
305623
305552
-
Trp
CCA
[ENA]
¡û
>W131014998
AIRF01000037
Bacillota
Enterococcus faecalis B3119 [AIRF]
265156
265085
-
Trp
CCA
[ENA]
¡û
>W131015053
AIRG01000020
Bacillota
Enterococcus faecalis B3126 [AIRG]
307171
307100
-
Trp
CCA
[ENA]
¡û
>W131015124
AIRH01000038
Bacillota
Enterococcus faecalis B3196 [AIRH]
305926
305855
-
Trp
CCA
[ENA]
¡û
>W131015186
AIRI01000029
Bacillota
Enterococcus faecalis B3286 [AIRI]
305991
305920
-
Trp
CCA
[ENA]
¡û
>W131015287
AIRK01000039
Bacillota
Enterococcus faecalis B4008 [AIRK]
306276
306205
-
Trp
CCA
[ENA]
¡û
>W131015341
AIRL01000033
Bacillota
Enterococcus faecalis B4018 [AIRL]
305623
305552
-
Trp
CCA
[ENA]
¡û
>W131015413
AIRM01000034
Bacillota
Enterococcus faecalis B4148 [AIRM]
301665
301594
-
Trp
CCA
[ENA]
¡û
>W131015467
AIRN01000043
Bacillota
Enterococcus faecalis B4163 [AIRN]
306115
306044
-
Trp
CCA
[ENA]
¡û
>W131015511
AIRO01000040
Bacillota
Enterococcus faecalis B4259 [AIRO]
148296
148225
-
Trp
CCA
[ENA]
¡û
>W131015563
AIRP01000041
Bacillota
Enterococcus faecalis B4267 [AIRP]
305623
305552
-
Trp
CCA
[ENA]
¡û
>W131015612
AIRQ01000024
Bacillota
Enterococcus faecalis B4270 [AIRQ]
148296
148225
-
Trp
CCA
[ENA]
¡û
>W131015668
AIRR01000031
Bacillota
Enterococcus faecalis B4411 [AIRR]
305680
305609
-
Trp
CCA
[ENA]
¡û
>W131015715
AIRS01000017
Bacillota
Enterococcus faecalis B4568 [AIRS]
148206
148135
-
Trp
CCA
[ENA]
¡û
>W131015763
AIRT01000022
Bacillota
Enterococcus faecalis B4638 [AIRT]
307149
307078
-
Trp
CCA
[ENA]
¡û
>W131015819
AIRU01000019
Bacillota
Enterococcus faecalis B4672 [AIRU]
264540
264469
-
Trp
CCA
[ENA]
¡û
>W131015866
AIRV01000021
Bacillota
Enterococcus faecalis B4674 [AIRV]
305746
305675
-
Trp
CCA
[ENA]
¡û
>W131015915
AIRW01000021
Bacillota
Enterococcus faecalis B4969 [AIRW]
148206
148135
-
Trp
CCA
[ENA]
¡û
>W131015959
AIRX01000015
Bacillota
Enterococcus faecalis B5076 [AIRX]
305683
305612
-
Trp
CCA
[ENA]
¡û
>W131016008
AIRY01000019
Bacillota
Enterococcus faecalis B594 [AIRY]
305314
305243
-
Trp
CCA
[ENA]
¡û
>W131016053
AIRZ01000022
Bacillota
Enterococcus faecalis B878 [AIRZ]
185116
185045
-
Trp
CCA
[ENA]
¡û
>W131016099
AISA01000018
Bacillota
Enterococcus faecalis B939 [AISA]
343364
343293
-
Trp
CCA
[ENA]
¡û
>W131016264
AISD01000032
Bacillota
Enterococcus faecalis UAA823 [AISD]
149997
149926
-
Trp
CCA
[ENA]
¡û
>W131028343
AJBB01000019
Bacillota
Enterococcus faecalis V587 [AJBB]
291475
291404
-
Trp
CCA
[ENA]
¡û
>W131028839
AJBK01000041
Bacillota
Enterococcus faecalis B5035 [AJBK]
306859
306788
-
Trp
CCA
[ENA]
¡û
>W131032514
AJDZ01000016
Bacillota
Enterococcus faecalis MMH594 [AJDZ]
306088
306017
-
Trp
CCA
[ENA]
¡û
>W131032734
AJED01000016
Bacillota
Enterococcus faecalis Ned10 [AJED]
312059
311988
-
Trp
CCA
[ENA]
¡û
>W131190228
ASED01000017
Bacillota
Enterococcus faecalis SF21520 [ASED]
148098
148027
-
Trp
CCA
[ENA]
¡û
>W131190281
ASEE01000025
Bacillota
Enterococcus faecalis TR161 [ASEE]
18606
18535
-
Trp
CCA
[ENA]
¡û
>W131202252
ASWP01000006
Bacillota
Enterococcus faecalis V583 [ASWP]
1700190
1700119
-
Trp
CCA
[ENA]
¡û
>W1711771979
MVGQ01000041
Bacillota
Enterococcus faecalis [MVGQ]
15026
14955
-
Trp
CCA
[ENA]
¡û
>W1711943424
NBDW01000041
Bacillota
Enterococcus faecalis [NBDW]
45571
45642
+
Trp
CCA
[ENA]
¡û
>W1712109091
NJFB01000001
Bacillota
Enterococcus faecalis [NJFB]
2863732
2863803
+
Trp
CCA
[ENA]
¡û
>W131012409
AIJH01000011
Bacillota
Enterococcus faecalis B1290 [AIJH]
158300
158229
-
Trp
CCA
[ENA]
¡û
>W131028563
AJBF01000018
Bacillota
Enterococcus faecalis CH19 [AJBF]
92578
92507
-
Trp
CCA
[ENA]
¡û
>W131032788
AJEE01000023
Bacillota
Enterococcus faecalis SF105 [AJEE]
311951
311880
-
Trp
CCA
[ENA]
¡û
>W131032920
AJEG01000018
Bacillota
Enterococcus faecalis CH116 [AJEG]
93256
93185
-
Trp
CCA
[ENA]
¡û
>W131032984
AJEH01000026
Bacillota
Enterococcus faecalis CH136 [AJEH]
92578
92507
-
Trp
CCA
[ENA]
¡û
>W131027068
AJAC01000020
Bacillota
Enterococcus faecalis UAA1180 [AJAC]
334554
334483
-
Trp
CCA
[ENA]
¡û
>W131188691
ASDA01000009
Bacillota
Enterococcus faecalis ATCC 19433 [ASDA]
466005
465934
-
Trp
CCA
[ENA]
¡û
>C009104
AE016830
Bacillota
Enterococcus faecalis V583 [AE016830]
2722769
2722698
-
Trp
CCA
[Ensembl]
¡û
>WENV180121533
OASS01000019
[OASS] human gut metagenome; faeces
35135
35206
+
Trp
CCA
[ENA]
¢þ
>WENV180128542
OATB01000299
[OATB] human gut metagenome; faeces
28700
28629
-
Trp
CCA
[ENA]
¢þ
>WENV180194638
OAZY01000027
[OAZY] human gut metagenome; faeces
51544
51473
-
Trp
CCA
[ENA]
¢þ
>WENV180405897
OBUN01000142
[OBUN] human gut metagenome; faeces
14369
14440
+
Trp
CCA
[ENA]
¢þ
>WENV181682041
OGOU01002176
[OGOU] human gut metagenome; faeces
14141
14070
-
Trp
CCA
[ENA]
¢þ
>WENV182596032
OJIY01000380
[OJIY] metagenome; faeces
1055
984
-
Trp
CCA
[ENA]
¢þ
>WENV182799568
OJTV01000099
[OJTV] human gut metagenome; human gut
17055
16984
-
Trp
CCA
[ENA]
¢þ
>WENV182833472
OKEU01001082
[OKEU] human gut metagenome; human gut
494
423
-
Trp
CCA
[ENA]
¢þ
>WENV182833887
OKEW01000716
[OKEW] human gut metagenome; human gut
56
127
+
Trp
CCA
[ENA]
¢þ
>W141282190
JAIG01000004
Bacillota
Enterococcus faecalis B388 [JAIG]
306895
306824
-
Trp
CCA
[ENA]
¡û
>WENV182846946
OKJU01001368
[OKJU] human gut metagenome; human gut
1418
1489
+
Trp
CCA
[ENA]
¢þ
>WENV182851599
OKLP01001951
[OKLP] human gut metagenome; human gut
1164
1235
+
Trp
CCA
[ENA]
¢þ
>W09115998
ACAV01000102
Bacillota
Enterococcus faecalis CH188 [ACAV]
15007
14936
-
Trp
CCA
[ENA]
¡û
>C181181774
CP029612
Bacillota
Enterococcus faecalis H25 [CP029612]
2594952
2594881
-
Trp
CCA
-
¡û
>C191164872
CP039296
Bacillota
Enterococcus faecalis VE14089 [CP039296]
2723052
2722981
-
Trp
CCA
-
¡û
>C191168811
CP039548
Bacillota
Enterococcus faecalis VE18379 [CP039548]
2723052
2722981
-
Trp
CCA
-
¡û
>C191168876
CP039549
Bacillota
Enterococcus faecalis VE18395 [CP039549]
2706238
2706167
-
Trp
CCA
-
¡û
>W1911245052
NSJR01000007
Bacillota
Enterococcus faecalis 44.1 [NSJR]
50159
50230
+
Trp
CCA
[ENA]
¡û
>W1911245173
NSJU01000007
Bacillota
Enterococcus faecalis EFC 16/09 [NSJU]
34086
34015
-
Trp
CCA
[ENA]
¡û
>W1911712666
QPTP01000008
Bacillota
Enterococcus faecalis AR01-215 [QPTP]
51584
51655
+
Trp
CCA
[ENA]
¡û
>W1810320364
PUBB01000026
Bacillota
Enterococcus faecalis CVM N55725 [PUBB]
25209
25138
-
Trp
CCA
[ENA]
¡û
>W1810320485
PUBD01000028
Bacillota
Enterococcus faecalis CVM N55753 [PUBD]
25361
25432
+
Trp
CCA
[ENA]
¡û
>W1810462899
PZZE01000001
Bacillota
Enterococcus faecalis B1376 [PZZE]
2614098
2614027
-
Trp
CCA
[ENA]
¡û
>W1810462966
PZZF01000001
Bacillota
Enterococcus faecalis B1532 [PZZF]
588888
588817
-
Trp
CCA
[ENA]
¡û
>W1810463028
PZZG01000002
Bacillota
Enterococcus faecalis B1734 [PZZG]
2614411
2614340
-
Trp
CCA
[ENA]
¡û
>W1810463093
PZZH01000001
Bacillota
Enterococcus faecalis B2535 [PZZH]
2613067
2612996
-
Trp
CCA
[ENA]
¡û
>W1810463158
PZZI01000002
Bacillota
Enterococcus faecalis B2949 [PZZI]
2573456
2573385
-
Trp
CCA
[ENA]
¡û
>W1810463223
PZZJ01000002
Bacillota
Enterococcus faecalis B3286 [PZZJ]
2615724
2615653
-
Trp
CCA
[ENA]
¡û
>W1810463288
PZZK01000002
Bacillota
Enterococcus faecalis B4969 [PZZK]
2615768
2615697
-
Trp
CCA
[ENA]
¡û
>W1830006215
PTUE01000016
Bacillota
Enterococcus faecalis CVM N60114F [PTUE]
1656
1727
+
Trp
CCA
[ENA]
¡û
>W1830006295
PTZG01000011
Bacillota
Enterococcus faecalis CVM N54097 [PTZG]
45559
45630
+
Trp
CCA
[ENA]
¡û
>W10115481
ADKN01000045
Bacillota
Enterococcus faecalis PC1.1 [ADKN]
26893
26822
-
Trp
CCA
[ENA]
¡û
>W10124630
AEBI01000018
Bacillota
Enterococcus faecalis TX1346 [AEBI]
2040
2111
+
Trp
CCA
[ENA]
¡û
>W10125726
AECG01000007
Bacillota
Enterococcus faecalis TX2141 [AECG]
15131
15060
-
Trp
CCA
[ENA]
¡û
>W1511365920
JSES01000019
Bacillota
Enterococcus faecalis ATCC 51299 [JSES]
45706
45777
+
Trp
CCA
[ENA]
¡û
>W11119056
ADKN01000045
Bacillota
Enterococcus faecalis PC1.1 [ADKN]
26893
26822
-
Trp
CCA
[ENA]
¡û
>W1511446472
JUXC01000066
Bacillota
Enterococcus faecalis 687_EFLS [JUXC]
51
122
+
Trp
CCA
[ENA]
¡û
>W11131517
AEBI01000018
Bacillota
Enterococcus faecalis TX1346 [AEBI]
2040
2111
+
Trp
CCA
[ENA]
¡û
>W11132613
AECG01000007
Bacillota
Enterococcus faecalis TX2141 [AECG]
15131
15060
-
Trp
CCA
[ENA]
¡û
>W1610016112
AOPW01000029
Bacillota
Enterococcus faecalis EnGen0310 = MMH594 [AOPW]
13973
13902
-
Trp
CCA
[ENA]
¡û
>W1610066852
BCQC01000011
Bacillota
Enterococcus faecalis NBRC 100480 [BCQC]
46826
46897
+
Trp
CCA
[ENA]
¡û
>W1610998120
LXID01000005
Bacillota
Enterococcus faecalis [LXID]
19738
19667
-
Trp
CCA
[ENA]
¡û
>W1730029653
MJEC01000019
Bacillota
Enterococcus faecalis [MJEC]
3734
3663
-
Trp
CCA
[ENA]
¡û
>W1710013003
AOPW01000029
Bacillota
Enterococcus faecalis EnGen0310 = MMH594 [AOPW]
13973
13902
-
Trp
CCA
[ENA]
¡û
>W1710064283
BCQC01000011
Bacillota
Enterococcus faecalis NBRC 100480 [BCQC]
46826
46897
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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