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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339904 (117 seq.)
>W131001769
AGYK01000020
Bacillota
Clostridium butyricum 60E.3 [AGYK]
16880
16954
+
Gly
GCC
[ENA]
¡û
>W131156819
AQQF01000116
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
82
8
-
Gly
GCC
[ENA]
¡û
>W131232813
AUJN01000031
Bacillota
Clostridium butyricum AGR2140 [AUJN]
19621
19547
-
Gly
GCC
[ENA]
¡û
>C171021739
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3805164
3805090
-
Gly
GCC
-
¡û
>C171021745
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3804592
3804518
-
Gly
GCC
-
¡û
>C171047549
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
415102
415176
+
Gly
GCC
-
¡û
>C171047555
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
415674
415748
+
Gly
GCC
-
¡û
>WENV180121455
OASR01005556
[OASR] human gut metagenome; faeces
83
157
+
Gly
GCC
[ENA]
¢þ
>WENV180124225
OASX01004074
[OASX] human gut metagenome; faeces
3928
3854
-
Gly
GCC
[ENA]
¢þ
>WENV180129358
OATC01001526
[OATC] human gut metagenome; faeces
3725
3799
+
Gly
GCC
[ENA]
¢þ
>WENV180144479
OAUA01016522
[OAUA] human gut metagenome; faeces
138
64
-
Gly
GCC
[ENA]
¢þ
>WENV180153166
OAUR01004986
[OAUR] human gut metagenome; faeces
891
965
+
Gly
GCC
[ENA]
¢þ
>WENV180171140
OAVV01044517
[OAVV] human gut metagenome; faeces
61
135
+
Gly
GCC
[ENA]
¢þ
>WENV180191256
OAXB01010857
[OAXB] human gut metagenome; faeces
369
295
-
Gly
GCC
[ENA]
¢þ
>WENV180278411
OBHX01003928
[OBHX] metagenome; feces
548
622
+
Gly
GCC
[ENA]
¢þ
>WENV180333630
OBLF01001380
[OBLF] metagenome; feces
443
517
+
Gly
GCC
[ENA]
¢þ
>WENV180348759
OBLO01011510
[OBLO] metagenome; feces
3957
3883
-
Gly
GCC
[ENA]
¢þ
>WENV180413529
OBVB01004057
[OBVB] human gut metagenome; faeces
502
576
+
Gly
GCC
[ENA]
¢þ
>WENV180431288
OBWG01014054
[OBWG] human gut metagenome; faeces
635
709
+
Gly
GCC
[ENA]
¢þ
>WENV180444502
OBWZ01020559
[OBWZ] human gut metagenome; faeces
176
102
-
Gly
GCC
[ENA]
¢þ
>WENV180448377
OBXE01020338
[OBXE] human gut metagenome; faeces
190
116
-
Gly
GCC
[ENA]
¢þ
>WENV180457593
OBXU01007504
[OBXU] human gut metagenome; faeces
103
29
-
Gly
GCC
[ENA]
¢þ
>WENV180463786
OBYC01035126
[OBYC] human gut metagenome; faeces
232
306
+
Gly
GCC
[ENA]
¢þ
>WENV180493319
OBZY01011801
[OBZY] human gut metagenome; faeces
364
290
-
Gly
GCC
[ENA]
¢þ
>WENV180504965
OCAO01000317
[OCAO] human gut metagenome; faeces
16789
16863
+
Gly
GCC
[ENA]
¢þ
>WENV180506835
OCAS01014369
[OCAS] human gut metagenome; faeces
500
574
+
Gly
GCC
[ENA]
¢þ
>W08001325
ABDT01000074
Bacillota
Clostridium butyricum 5521 [ABDT]
415
489
+
Gly
GCC
[ENA]
¡û
>W08001331
ABDT01000074
Bacillota
Clostridium butyricum 5521 [ABDT]
987
1061
+
Gly
GCC
[ENA]
¡û
>WENV181798427
OGRV01000249
[OGRV] human gut metagenome; fecal sample 3 from infant 4
149
223
+
Gly
GCC
[ENA]
¢þ
>WENV181801468
OGSB01000350
[OGSB] human gut metagenome; fecal sample 5 from infant 3
19521
19447
-
Gly
GCC
[ENA]
¢þ
>WENV181802009
OGSC01001070
[OGSC] human gut metagenome; fecal sample 8 from infant 5
147
221
+
Gly
GCC
[ENA]
¢þ
>WENV181805133
OGSH01000864
[OGSH] human gut metagenome; fecal sample 5 from infant 6
151
225
+
Gly
GCC
[ENA]
¢þ
>WENV181807143
OGSN01005976
[OGSN] human gut metagenome; fecal sample 7 from infant 8
147
221
+
Gly
GCC
[ENA]
¢þ
>WENV181807858
OGSQ01000428
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
149
223
+
Gly
GCC
[ENA]
¢þ
>WENV181809654
OGST01001039
[OGST] human gut metagenome; fecal sample 7 from infant 6
151
225
+
Gly
GCC
[ENA]
¢þ
>WENV181810630
OGSV01000523
[OGSV] human gut metagenome; fecal sample 4 from infant 3
147
221
+
Gly
GCC
[ENA]
¢þ
>WENV181811093
OGSX01007609
[OGSX] human gut metagenome; fecal sample 1 from infant 8
397
471
+
Gly
GCC
[ENA]
¢þ
>WENV181811378
OGSY01001202
[OGSY] human gut metagenome; fecal sample 5 from infant 8
147
221
+
Gly
GCC
[ENA]
¢þ
>WENV181811741
OGSZ01000959
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
147
221
+
Gly
GCC
[ENA]
¢þ
>WENV181814062
OGTE01003417
[OGTE] human gut metagenome; fecal sample 2 from infant 3
395
469
+
Gly
GCC
[ENA]
¢þ
>WENV181814482
OGTG01000233
[OGTG] human gut metagenome; fecal sample 1 from infant 4
147
221
+
Gly
GCC
[ENA]
¢þ
>WENV181815121
OGTI01002647
[OGTI] human gut metagenome; fecal sample 5 from infant 1
158
84
-
Gly
GCC
[ENA]
¢þ
>WENV181817663
OGTN01002610
[OGTN] human gut metagenome; fecal sample 5 from infant 4
147
221
+
Gly
GCC
[ENA]
¢þ
>WENV181818347
OGTS01000271
[OGTS] human gut metagenome; fecal sample 4 from infant 4
16596
16670
+
Gly
GCC
[ENA]
¢þ
>WENV181818645
OGTT01000762
[OGTT] human gut metagenome; fecal sample 6 from infant 8
151
225
+
Gly
GCC
[ENA]
¢þ
>WENV181818914
OGTU01000228
[OGTU] human gut metagenome; fecal sample 6 from infant 4
147
221
+
Gly
GCC
[ENA]
¢þ
>WENV181823006
OGUH01002823
[OGUH] human gut metagenome; fecal sample 3 from infant 3
358
432
+
Gly
GCC
[ENA]
¢þ
>WENV182401823
OIER01023578
[OIER] human gut metagenome; human gut
433
359
-
Gly
GCC
[ENA]
¢þ
>WENV182601907
OJJJ01001505
[OJJJ] metagenome; faeces
2275
2201
-
Gly
GCC
[ENA]
¢þ
>W141258976
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
579181
579107
-
Gly
GCC
[ENA]
¡û
>W141258982
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
578609
578535
-
Gly
GCC
[ENA]
¡û
>WENV182613863
OJKA01025591
[OJKA] metagenome; faeces
614
540
-
Gly
GCC
[ENA]
¢þ
>WENV182613869
OJKA01025591
[OJKA] metagenome; faeces
81
7
-
Gly
GCC
[ENA]
¢þ
>WENV182617457
OJKD01009856
[OJKD] metagenome; faeces
252
326
+
Gly
GCC
[ENA]
¢þ
>WENV182823791
OKBW01007035
[OKBW] human gut metagenome; human gut
153
79
-
Gly
GCC
[ENA]
¢þ
>WENV182824065
OKBZ01002300
[OKBZ] human gut metagenome; human gut
382
456
+
Gly
GCC
[ENA]
¢þ
>WENV182826992
OKCW01001937
[OKCW] human gut metagenome; human gut
263
337
+
Gly
GCC
[ENA]
¢þ
>WENV182826999
OKCW01001937
[OKCW] human gut metagenome; human gut
887
961
+
Gly
GCC
[ENA]
¢þ
>WENV182827005
OKCW01001937
[OKCW] human gut metagenome; human gut
1459
1533
+
Gly
GCC
[ENA]
¢þ
>WENV182835046
OKFJ01001909
[OKFJ] human gut metagenome; human gut
1366
1292
-
Gly
GCC
[ENA]
¢þ
>WENV182839491
OKHE01001012
[OKHE] human gut metagenome; human gut
1499
1425
-
Gly
GCC
[ENA]
¢þ
>WENV182841563
OKHW01000437
[OKHW] human gut metagenome; human gut
835
761
-
Gly
GCC
[ENA]
¢þ
>WENV182848034
OKKE01006077
[OKKE] human gut metagenome; human gut
149
223
+
Gly
GCC
[ENA]
¢þ
>WENV182852614
OKLZ01001030
[OKLZ] human gut metagenome; human gut
1122
1048
-
Gly
GCC
[ENA]
¢þ
>WENV182855816
OKNE01002114
[OKNE] human gut metagenome; human gut
792
866
+
Gly
GCC
[ENA]
¢þ
>WENV182858300
OKOC01006254
[OKOC] human gut metagenome; human gut
349
275
-
Gly
GCC
[ENA]
¢þ
>WENV182864800
OKQE01002880
[OKQE] human gut metagenome; human gut
984
1058
+
Gly
GCC
[ENA]
¢þ
>WENV182865676
OKQK01008356
[OKQK] human gut metagenome; human gut
588
514
-
Gly
GCC
[ENA]
¢þ
>WENV182944543
OKVJ01000216
[OKVJ] human gut metagenome; human gut
10811
10885
+
Gly
GCC
[ENA]
¢þ
>WENV182944549
OKVJ01000216
[OKVJ] human gut metagenome; human gut
11383
11457
+
Gly
GCC
[ENA]
¢þ
>WENV182949921
OKVQ01001845
[OKVQ] human gut metagenome; human gut
93
167
+
Gly
GCC
[ENA]
¢þ
>WENV182950646
OKVS01003901
[OKVS] human gut metagenome; human gut
255
181
-
Gly
GCC
[ENA]
¢þ
>WENV182952935
OKVX01000695
[OKVX] human gut metagenome; human gut
1386
1312
-
Gly
GCC
[ENA]
¢þ
>WENV183067214
OLIL01018049
[OLIL] metagenome; faeces
562
636
+
Gly
GCC
[ENA]
¢þ
>WENV170016585
AZMM01003363
[AZMM] human gut metagenome; premature infant gut
8
82
+
Gly
GCC
[ENA]
¢þ
>WENV170016592
AZMM01005334
[AZMM] human gut metagenome; premature infant gut
208
134
-
Gly
GCC
[ENA]
¢þ
>C191171168
CP039702
Bacillota
Clostridium butyricum [CP039702]
473908
473982
+
Gly
GCC
-
¡û
>C191171173
CP039702
Bacillota
Clostridium butyricum [CP039702]
474479
474553
+
Gly
GCC
-
¡û
>C191171293
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2221375
2221449
+
Gly
GCC
-
¡û
>C191171299
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2221947
2222021
+
Gly
GCC
-
¡û
>W09132839
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
471782
471708
-
Gly
GCC
[ENA]
¡û
>W09132845
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
471210
471136
-
Gly
GCC
[ENA]
¡û
>W1910637998
LRDH01000165
Bacillota
Clostridium butyricum 300064 [LRDH]
147
221
+
Gly
GCC
[ENA]
¡û
>W1810052494
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
37530
37604
+
Gly
GCC
[ENA]
¡û
>W1810052500
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
38063
38137
+
Gly
GCC
[ENA]
¡û
>W1810052507
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
56627
56701
+
Gly
GCC
[ENA]
¡û
>W1810052534
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
23502
23428
-
Gly
GCC
[ENA]
¡û
>W1810052540
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
22969
22895
-
Gly
GCC
[ENA]
¡û
>W1810052547
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
4405
4331
-
Gly
GCC
[ENA]
¡û
>W1810805977
QRUG01000045
Bacillota
Clostridium butyricum AF25-25 [QRUG]
93
167
+
Gly
GCC
[ENA]
¡û
>W1511350243
JRMA01000084
Bacillota
Clostridium butyricum INCQS635 [JRMA]
10693
10619
-
Gly
GCC
[ENA]
¡û
>W1511501400
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3370555
3370481
-
Gly
GCC
[ENA]
¡û
>W1511501406
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3369983
3369909
-
Gly
GCC
[ENA]
¡û
>W1511554780
JZWE01000163
Bacillota
Clostridium sp. IBUN22A [JZWE]
3332
3258
-
Gly
GCC
[ENA]
¡û
>W1511554805
JZWF01000020
Bacillota
Clostridium sp. IBUN125C [JZWF]
171
245
+
Gly
GCC
[ENA]
¡û
>W1511554871
JZWG01000073
Bacillota
Clostridium sp. IBUN13A [JZWG]
81
155
+
Gly
GCC
[ENA]
¡û
>W1511554882
JZWG01000073
Bacillota
Clostridium sp. IBUN13A [JZWG]
17053
17127
+
Gly
GCC
[ENA]
¡û
>W1511554945
JZWH01000037
Bacillota
Clostridium sp. IBUN62F [JZWH]
847
921
+
Gly
GCC
[ENA]
¡û
>W1511554959
JZWH01000051
Bacillota
Clostridium sp. IBUN62F [JZWH]
87
161
+
Gly
GCC
[ENA]
¡û
>C161054134
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
725862
725936
+
Gly
GCC
-
¡û
>C161054140
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
726434
726508
+
Gly
GCC
-
¡û
>C161055887
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
413597
413671
+
Gly
GCC
-
¡û
>C161055893
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
414169
414243
+
Gly
GCC
-
¡û
>C161076411
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
398856
398930
+
Gly
GCC
-
¡û
>W1610104388
CZBQ01000108
Bacillota
Clostridium paraputrificum [CZBQ]
308
382
+
Gly
GCC
[ENA]
¡û
>W1610112589
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
23635
23561
-
Gly
GCC
[ENA]
¡û
>W1610112596
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
23013
22939
-
Gly
GCC
[ENA]
¡û
>W1610112603
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
4449
4375
-
Gly
GCC
[ENA]
¡û
>W1610627680
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
20035
19961
-
Gly
GCC
[ENA]
¡û
>W1610627686
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
19463
19389
-
Gly
GCC
[ENA]
¡û
>WENV082791
BAAW01001013
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
2413
2487
+
Gly
GCC
[ENA]
>W1710107092
CZBQ01000108
Bacillota
Clostridium paraputrificum [CZBQ]
308
382
+
Gly
GCC
[ENA]
¡û
>W1710115293
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
23635
23561
-
Gly
GCC
[ENA]
¡û
>W1710115300
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
23013
22939
-
Gly
GCC
[ENA]
¡û
>W1710115307
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
4449
4375
-
Gly
GCC
[ENA]
¡û
>W1710758807
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
20035
19961
-
Gly
GCC
[ENA]
¡û
>W1710758813
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
19463
19389
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK