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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339939 (24 seq.)
>W131241499
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
44646
44720
+
Gln
TTG
[ENA]
¡û
>W131241500
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
44843
44917
+
Gln
TTG
[ENA]
¡û
>W131241503
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
45283
45357
+
Gln
TTG
[ENA]
¡û
>C171016812
CP012418
Gammaproteobacteria
Kangiella sediminilitoris KCTC 23892 [CP012418]
1978852
1978926
+
Gln
TTG
-
¡û
>W131169986
ARFE01000003
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
193347
193273
-
Gln
TTG
[ENA]
¡û
>W131223259
AUBY01000007
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
39013
38939
-
Gln
TTG
[ENA]
¡û
>W131223262
AUBY01000007
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
38595
38521
-
Gln
TTG
[ENA]
¡û
>W131223316
AUBZ01000014
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
24900
24974
+
Gln
TTG
[ENA]
¡û
>W131223317
AUBZ01000014
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
25039
25113
+
Gln
TTG
[ENA]
¡û
>W131223320
AUBZ01000014
Gammaproteobacteria
Aliagarivorans taiwanensis DSM 22990 [AUBZ]
25385
25459
+
Gln
TTG
[ENA]
¡û
>WENV180346072
OBLN01023968
[OBLN] sediment metagenome; sediment
474
548
+
Gln
TTG
[ENA]
¢þ
>WENV170024701
BCQL01101999
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
507
433
-
Gln
TTG
[ENA]
¢þ
>C181113470
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
570910
570836
-
Gln
TTG
-
¡û
>W09109203
ABUB01000001
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
521136
521210
+
Gln
TTG
[ENA]
¡û
>W1910178251
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
249764
249838
+
Gln
TTG
[ENA]
¡û
>W1910178252
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
249965
250039
+
Gln
TTG
[ENA]
¡û
>W1910178255
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
250404
250478
+
Gln
TTG
[ENA]
¡û
>W1911717904
QQTG01000002
Gammaproteobacteria
Kangiella sp. HD9-110m-PIT-SAG07 [QQTG]
115916
115842
-
Gln
TTG
[ENA]
¡û
>W1810628289
QICH01000002
Gammaproteobacteria
Kangiella spongicola ATCC BAA-2076 [QICH]
491890
491964
+
Gln
TTG
[ENA]
¡û
>C151074716
CP010975
Gammaproteobacteria
Kangiella geojedonensis YCS-5 [CP010975]
1968378
1968452
+
Gln
TTG
[Ensembl]
¡û
>C10108031
CP001707
Gammaproteobacteria
Kangiella koreensis DSM 16069 [CP001707]
638106
638032
-
Gln
TTG
[Ensembl]
¡û
>C161049630
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1222018
1222092
+
Gln
TTG
-
¡û
>C161049631
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1222207
1222281
+
Gln
TTG
-
¡û
>C161049634
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1222642
1222716
+
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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