This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339954 (43 seq.)
>A171004380
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1815308
1815237
-
Cys
GCA
-
¡û
>A171004381
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1815171
1815100
-
Cys
GCA
-
¡û
>A171004612
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
49416
49487
+
Cys
GCA
-
¡û
>A171004613
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
49560
49631
+
Cys
GCA
-
¡û
>A171004664
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
47267
47338
+
Cys
GCA
-
¡û
>A171004665
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
47411
47482
+
Cys
GCA
-
¡û
>A171004718
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
51243
51314
+
Cys
GCA
-
¡û
>A171004768
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
55437
55508
+
Cys
GCA
-
¡û
>A171004769
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
55580
55651
+
Pseudo
GCA
-
¡û
>A171004821
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
55374
55445
+
Cys
GCA
-
¡û
>A171004822
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
55517
55588
+
Pseudo
GCA
-
¡û
>A171004874
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
63121
63192
+
Cys
GCA
-
¡û
>A171004875
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
63264
63335
+
Pseudo
GCA
-
¡û
>A171005332
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3150751
3150680
-
Cys
GCA
-
¡û
>A171005333
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3150615
3150544
-
Cys
GCA
-
¡û
>A171005393
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
51953
52024
+
Cys
GCA
-
¡û
>A171005394
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
52085
52156
+
Cys
GCA
-
¡û
>A171005448
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
52397
52468
+
Cys
GCA
-
¡û
>A171005449
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
52529
52600
+
Cys
GCA
-
¡û
>A171005505
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
55521
55592
+
Cys
GCA
-
¡û
>A171005506
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
55658
55729
+
Cys
GCA
-
¡û
>A171005558
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
56839
56910
+
Cys
GCA
-
¡û
>A171005559
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
56976
57047
+
Cys
GCA
-
¡û
>A171005643
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3029722
3029651
-
Cys
GCA
-
¡û
>A171005644
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3029585
3029514
-
Cys
GCA
-
¡û
>At1432
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5686715
5686644
-
Cys
GCA
[Ensembl]
¡û
>At1475
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1135381
1135310
-
Cys
GCA
[Ensembl]
¡û
>At1476
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1135518
1135447
-
Cys
GCA
[Ensembl]
¡û
>WENV170724477
LSQX01306886
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9365
9294
-
Cys
GCA
[ENA]
¢þ
>W1910226842
FNCA01000012
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
96
167
+
Cys
GCA
[ENA]
¡û
>W1910230866
FPAO01000001
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
6325
6396
+
Cys
GCA
[ENA]
¡û
>W1910570713
JJPU01000078
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
16132
16061
-
Cys
GCA
[ENA]
¡û
>W1910635277
LMVP01000529
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
19530
19459
-
Cys
GCA
[ENA]
¡û
>W1910635278
LMVP01000529
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
19394
19323
-
Cys
GCA
[ENA]
¡û
>W1910655389
LZPK01000124
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
1491
1562
+
Cys
GCA
[ENA]
¡û
>W1910655390
LZPK01000124
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
1628
1699
+
Cys
GCA
[ENA]
¡û
>W1610000010
AAAR03000001
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
227240
227169
-
Cys
GCA
[ENA]
¡û
>W1610000011
AAAR03000001
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
227103
227032
-
Cys
GCA
[ENA]
¡û
>W1610032591
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
1830785
1830856
+
Cys
GCA
[ENA]
¡û
>W1610032612
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
1426874
1426803
-
Cys
GCA
[ENA]
¡û
>W1610032619
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
768343
768272
-
Cys
GCA
[ENA]
¡û
>W1610048596
BBEF01000013
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
1453
1524
+
Cys
GCA
[ENA]
¡û
>W1610670271
LKAZ01000057
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
3783
3854
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK