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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339963 (99 seq.)
>A171001644
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
248164
248091
-
Ala
CGC
-
¡û
>A171003592
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
2544023
2544095
+
Ala
CGC
-
¡û
>A171004345
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1528796
1528868
+
Ala
CGC
-
¡û
>A171004510
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
284610
284681
+
Ala
CGC
-
¡û
>A171004610
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
627966
627895
-
Ala
CGC
-
¡û
>A171004632
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
3875587
3875659
+
Ala
CGC
-
¡û
>A171004688
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
2321344
2321272
-
Ala
CGC
-
¡û
>A171004758
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
1179035
1178964
-
Ala
CGC
-
¡û
>A171004801
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1915802
1915731
-
Ala
CGC
-
¡û
>A171004854
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
1847403
1847332
-
Ala
CGC
-
¡û
>A171004882
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
1759940
1760011
+
Ala
CGC
-
¡û
>A171004942
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
2769896
2769968
+
Ala
CGC
-
¡û
>A171005009
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
2670988
2670916
-
Ala
CGC
-
¡û
>A171005061
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
2747421
2747349
-
Ala
CGC
-
¡û
>A171005103
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
3620259
3620331
+
Ala
CGC
-
¡û
>A171005152
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2767266
2767338
+
Ala
CGC
-
¡û
>A171005270
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
3432566
3432495
-
Ala
CGC
-
¡û
>A171005304
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
1787925
1787997
+
Ala
CGC
-
¡û
>A171005373
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1905085
1905156
+
Ala
CGC
-
¡û
>A171005541
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1619351
1619280
-
Ala
CGC
-
¡û
>WENV180345640
OBLN01001421
[OBLN] sediment metagenome; sediment
2400
2472
+
Ala
CGC
[ENA]
¢þ
>WENV181360902
OFNC01001973
[OFNC] sediment metagenome; Lake sediment
294
367
+
Ala
CGC
[ENA]
¢þ
>WENV183513670
OMKS01006844
[OMKS] sediment metagenome; hot spring sediment
7415
7486
+
Ala
CGC
[ENA]
¢þ
>WENV183701713
PDVH01000412
[PDVH] alkali sediment metagenome; glacial lake sediment
5771
5698
-
Ala
CGC
[ENA]
¢þ
>WENV170008269
AMZC01006786
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
4500
4571
+
Ala
CGC
[ENA]
¢þ
>WENV170021205
BBPF01003966
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
13410
13339
-
Ala
CGC
[ENA]
¢þ
>At1414
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
1740526
1740455
-
Ala
CGC
[Ensembl]
¡û
>At1457
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
4407895
4407966
+
Ala
CGC
[Ensembl]
¡û
>At1524
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2997633
2997704
+
Ala
CGC
[Ensembl]
¡û
>WENV170684834
LFRM01060395
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1250
1321
+
Ala
CGC
[ENA]
¢þ
>WENV170692521
LGOV01011304
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
482
409
-
Ala
CGC
[ENA]
¢þ
>WENV170693813
LGVC01082670
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
296
223
-
Ala
CGC
[ENA]
¢þ
>W1910230900
FPAO01000004
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
163360
163289
-
Ala
CGC
[ENA]
¡û
>W1910569248
JJOR01000111
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
73645
73717
+
Ala
CGC
[ENA]
¡û
>W1910569296
JJOS01000054
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
29799
29727
-
Ala
CGC
[ENA]
¡û
>W1910569363
JJOT01000068
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
73026
73098
+
Ala
CGC
[ENA]
¡û
>W1910569424
JJOU01000226
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
47677
47749
+
Ala
CGC
[ENA]
¡û
>W1910569700
JJPA01000084
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
57083
57011
-
Ala
CGC
[ENA]
¡û
>W1910569736
JJPB01000004
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
95288
95360
+
Ala
CGC
[ENA]
¡û
>W1910569800
JJPC01000034
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
49497
49425
-
Ala
CGC
[ENA]
¡û
>W1910569880
JJPD01000184
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
9515
9587
+
Ala
CGC
[ENA]
¡û
>W1910569894
JJPE01000008
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
60072
60144
+
Ala
CGC
[ENA]
¡û
>W1910569970
JJPF01000080
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
60225
60297
+
Ala
CGC
[ENA]
¡û
>W1910570024
JJPG01000126
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
60277
60349
+
Ala
CGC
[ENA]
¡û
>W1910570071
JJPH01000092
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
59809
59881
+
Ala
CGC
[ENA]
¡û
>W1910570139
JJPI01000141
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
150700
150628
-
Ala
CGC
[ENA]
¡û
>W1910570180
JJPJ01000091
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
37189
37261
+
Ala
CGC
[ENA]
¡û
>W1910570213
JJPK01000039
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
53310
53238
-
Ala
CGC
[ENA]
¡û
>W1910570274
JJPL01000116
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
58718
58646
-
Ala
CGC
[ENA]
¡û
>W1910570317
JJPM01000161
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
48506
48434
-
Ala
CGC
[ENA]
¡û
>W1910570355
JJPN01000040
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
33875
33803
-
Ala
CGC
[ENA]
¡û
>W1910570437
JJPO01000142
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
41035
41107
+
Ala
CGC
[ENA]
¡û
>W1910570495
JJPP01000153
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
11510
11582
+
Ala
CGC
[ENA]
¡û
>W1910570540
JJPQ01000151
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
41207
41279
+
Ala
CGC
[ENA]
¡û
>W1910570599
JJPR01000159
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
68357
68429
+
Ala
CGC
[ENA]
¡û
>W1910570631
JJPS01000171
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
26686
26758
+
Ala
CGC
[ENA]
¡û
>W1910570682
JJPT01000113
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
35680
35752
+
Ala
CGC
[ENA]
¡û
>W1910570717
JJPU01000086
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
36209
36281
+
Ala
CGC
[ENA]
¡û
>W1910570766
JJPV01000036
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
35954
36026
+
Ala
CGC
[ENA]
¡û
>W1910570800
JJPW01000005
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
145800
145728
-
Ala
CGC
[ENA]
¡û
>W1910570863
JJPX01000049
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
32751
32679
-
Ala
CGC
[ENA]
¡û
>W1910570914
JJPY01000048
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
33434
33362
-
Ala
CGC
[ENA]
¡û
>W1910570969
JJPZ01000034
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
33852
33780
-
Ala
CGC
[ENA]
¡û
>W1910571009
JJQA01000020
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
113264
113192
-
Ala
CGC
[ENA]
¡û
>W1910571051
JJQB01000002
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
113162
113090
-
Ala
CGC
[ENA]
¡û
>W1910571137
JJQC01000118
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
115105
115033
-
Ala
CGC
[ENA]
¡û
>W1910571154
JJQD01000009
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
18282
18210
-
Ala
CGC
[ENA]
¡û
>W1910571225
JJQE01000111
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
60286
60358
+
Ala
CGC
[ENA]
¡û
>W1910571304
JJQF01000151
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
80488
80416
-
Ala
CGC
[ENA]
¡û
>W1910571333
JJQG01000114
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
76262
76334
+
Ala
CGC
[ENA]
¡û
>W1910571367
JJQH01000072
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
9468
9540
+
Ala
CGC
[ENA]
¡û
>W1910571443
JJQI01000094
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
68065
68137
+
Ala
CGC
[ENA]
¡û
>W1910571463
JJQJ01000048
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
9499
9571
+
Ala
CGC
[ENA]
¡û
>W1910571527
JJQK01000066
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
34934
34862
-
Ala
CGC
[ENA]
¡û
>W1910571652
JJQM01000084
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
51578
51506
-
Ala
CGC
[ENA]
¡û
>W1910571681
JJQN01000022
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
41907
41835
-
Ala
CGC
[ENA]
¡û
>W1910571775
JJQO01000301
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
51562
51490
-
Ala
CGC
[ENA]
¡û
>W1910571812
JJQP01000111
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
18251
18179
-
Ala
CGC
[ENA]
¡û
>W1910571870
JJQQ01000066
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
36063
36135
+
Ala
CGC
[ENA]
¡û
>W1910571906
JJQR01000009
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
73645
73717
+
Ala
CGC
[ENA]
¡û
>W1910571953
JJQS01000015
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
72995
73067
+
Ala
CGC
[ENA]
¡û
>W1910572007
JJQT01000017
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
19990
20062
+
Ala
CGC
[ENA]
¡û
>W1910572099
JJQU01000256
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
28467
28395
-
Ala
CGC
[ENA]
¡û
>W1910572104
JJQV01000005
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
72965
73037
+
Ala
CGC
[ENA]
¡û
>W1910572174
JJQW01000086
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
51348
51276
-
Ala
CGC
[ENA]
¡û
>W1910572212
JJQX01000042
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
500
572
+
Ala
CGC
[ENA]
¡û
>W1910572318
JJQZ01000071
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
68958
69030
+
Ala
CGC
[ENA]
¡û
>W1910572371
JJRA01000070
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
69011
69083
+
Ala
CGC
[ENA]
¡û
>W1910572396
JJRB01000013
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
73002
73074
+
Ala
CGC
[ENA]
¡û
>W1910573145
JOMF01000007
Euryarchaeota
Methanomicrobium mobile BP [JOMF]
115246
115317
+
Ala
CGC
[ENA]
¡û
>W1910575048
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
2300368
2300440
+
Ala
CGC
[ENA]
¡û
>W1910575275
JRHO01000014
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
472084
472155
+
Ala
CGC
[ENA]
¡û
>W1910635256
LMVP01000268
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
19956
20029
+
Ala
CGC
[ENA]
¡û
>W1910783557
MPPA01000009
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
274361
274290
-
Ala
CGC
[ENA]
¡û
>W1610000048
AAAR03000022
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
62010
62081
+
Ala
CGC
[ENA]
¡û
>W1610046904
BBCW01000033
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
26893
26822
-
Ala
CGC
[ENA]
¡û
>W1610605085
LFRP01000010
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
1250
1321
+
Ala
CGC
[ENA]
¡û
>W1610670257
LKAZ01000046
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
88905
88834
-
Ala
CGC
[ENA]
¡û
>W1610919911
LSRV01000052
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
5712
5640
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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