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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340001 (70 seq.)
>W1711184871
LWMN01000016
Bacillota
Enterococcus thailandicus [LWMN]
786
859
+
His
GTG
[ENA]
¡û
>W1711184875
LWMN01000016
Bacillota
Enterococcus thailandicus [LWMN]
1208
1281
+
His
GTG
[ENA]
¡û
>W1711425560
MIEY01000038
Bacillota
Bacillus cereus [MIEY]
1362
1437
+
His
GTG
[ENA]
¡û
>W1711460325
MJED01000007
Bacillota
Enterococcus gallinarum [MJED]
173975
173902
-
His
GTG
[ENA]
¡û
>W1711460402
MJEF01000004
Bacillota
Enterococcus casseliflavus [MJEF]
173109
173036
-
His
GTG
[ENA]
¡û
>W1711460488
MJEG01000012
Bacillota
Enterococcus casseliflavus [MJEG]
147802
147729
-
His
GTG
[ENA]
¡û
>W1711738465
MUBE01000007
Bacillota
Enterococcus casseliflavus [MUBE]
313626
313553
-
His
GTG
[ENA]
¡û
>W1712067632
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
779182
779255
+
His
GTG
[ENA]
¡û
>W1712067766
NGLF01000001
Bacillota
Enterococcus sp. 4E1_DIV0656 [NGLF]
2070882
2070955
+
His
GTG
[ENA]
¡û
>W1712067921
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
2446152
2446079
-
His
GTG
[ENA]
¡û
>W1712068063
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
2949664
2949737
+
His
GTG
[ENA]
¡û
>W1712068143
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
2384111
2384038
-
His
GTG
[ENA]
¡û
>W1712069280
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
336886
336959
+
His
GTG
[ENA]
¡û
>W1712069907
NGMR01000001
Bacillota
Enterococcus sp. 5B7_DIV0075 [NGMR]
2731451
2731378
-
His
GTG
[ENA]
¡û
>W1712097067
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
2798754
2798681
-
His
GTG
[ENA]
¡û
>W131027651
AJAM01000016
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
4203
4276
+
His
GTG
[ENA]
¡û
>W131208702
ATIC01000044
Bacillota
Enterococcus casseliflavus 14-MB-W-14 [ATIC]
330
403
+
His
GTG
[ENA]
¡û
>W131208745
ATID01000051
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
726
799
+
His
GTG
[ENA]
¡û
>W131209141
ATIM01000157
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
724
797
+
His
GTG
[ENA]
¡û
>WENV180453383
OBXM01000067
[OBXM] human gut metagenome; faeces
250
323
+
His
GTG
[ENA]
¢þ
>WENV182400156
OIEP01002273
[OIEP] human gut metagenome; human gut
616
689
+
His
GTG
[ENA]
¢þ
>WENV182601921
OJJJ01001559
[OJJJ] metagenome; faeces
821
894
+
His
GTG
[ENA]
¢þ
>WENV182938182
OKVD01000755
[OKVD] human gut metagenome; human gut
6074
6147
+
His
GTG
[ENA]
¢þ
>WENV170539879
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
715
788
+
His
GTG
[ENA]
¢þ
>WENV170541598
CXPQ01001867
[CXPQ] human gut metagenome genome assembly hB10, contig; ENVO:feces
1000
1073
+
His
GTG
[ENA]
¢þ
>WENV170544469
CXRK01000410
[CXRK] human gut metagenome genome assembly hE7, contig hE7_contig003222.; ENVO:feces
4037
3964
-
His
GTG
[ENA]
¢þ
>WENV170545213
CXRX01000095
[CXRX] human gut metagenome genome assembly hG12, contig; ENVO:feces
3894
3821
-
His
GTG
[ENA]
¢þ
>WENV170548590
CXUI01002387
[CXUI] Human gut metagenome genome assembly, contig: mD1_contig003205.; ENVO:feces
218
145
-
His
GTG
[ENA]
¢þ
>C181075877
CP023074
Bacillota
Enterococcus thailandicus a523 [CP023074]
822188
822261
+
His
GTG
-
¡û
>C181075881
CP023074
Bacillota
Enterococcus thailandicus a523 [CP023074]
822611
822684
+
His
GTG
-
¡û
>C191094168
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
1840073
1840146
+
His
GTG
-
¡û
>C191177807
CP040461
Bacillota
Enterococcus sp. M190262 [CP040461]
2044804
2044877
+
His
GTG
-
¡û
>W09115337
ACAH01000048
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
694
767
+
His
GTG
[ENA]
¡û
>W09115410
ACAJ01000015
Bacillota
Enterococcus gallinarum EG2 [ACAJ]
685
758
+
His
GTG
[ENA]
¡û
>W09115525
ACAL01000035
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
694
767
+
His
GTG
[ENA]
¡û
>W09115649
ACAO01000031
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
695
768
+
His
GTG
[ENA]
¡û
>W141734583
JNLR01000003
Bacillota
Enterococcus gallinarum [JNLR]
2058289
2058216
-
His
GTG
[ENA]
¡û
>W1910181720
BJMG01000029
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
13644
13571
-
His
GTG
[ENA]
¡û
>W1910609903
LERZ01000012
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
203024
202951
-
His
GTG
[ENA]
¡û
>W1911710292
QPQX01000006
Bacillota
Enterococcus sp. ARL09-542 [QPQX]
846
919
+
His
GTG
[ENA]
¡û
>W1810237752
PPHK01000002
Bacillota
Enterococcus gallinarum EG1 [PPHK]
2096
2169
+
His
GTG
[ENA]
¡û
>W1810793567
QRJU01000012
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
110916
110843
-
His
GTG
[ENA]
¡û
>W1810798133
QRMZ01000009
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
889
962
+
His
GTG
[ENA]
¡û
>W1810907688
QVHY01000003
Bacillota
Enterococcus gallinarum OF05-6AC [QVHY]
363362
363289
-
His
GTG
[ENA]
¡û
>C151006871
CP004856
Bacillota
Enterococcus casseliflavus EC20 [CP004856]
2401591
2401518
-
His
GTG
[Ensembl]
¡û
>W1510079465
CDRD01001891
Bacillota
Enterococcus casseliflavus 3h10B [CDRD]
285
212
-
His
GTG
[ENA]
¡û
>W1510079513
CDRE01000263
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
1435
1362
-
His
GTG
[ENA]
¡û
>W1511187718
JMGP01000002
Bacillota
Enterococcus gallinarum A6981 [JMGP]
846
919
+
His
GTG
[ENA]
¡û
>C161066327
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
2148115
2148188
+
His
GTG
[Ensembl]
¡û
>W1610066464
BCPT01000009
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
144682
144609
-
His
GTG
[ENA]
¡û
>W1610066949
BCQE01000017
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
88472
88399
-
His
GTG
[ENA]
¡û
>W1610067245
BCQJ01000001
Bacillota
Enterococcus canis NBRC 100695 [BCQJ]
661
734
+
His
GTG
[ENA]
¡û
>W1610090434
CWML01000007
Bacillota
Enterococcus thailandicus monocytogenes [CWML]
983
1056
+
His
GTG
[ENA]
¡û
>W1610090438
CWML01000007
Bacillota
Enterococcus thailandicus monocytogenes [CWML]
1406
1479
+
His
GTG
[ENA]
¡û
>W121001863
ADLY01000038
Bacillota
Enterococcus saccharolyticus 30_1 [ADLY]
1192
1265
+
His
GTG
[ENA]
¡û
>W121077315
AKCC01000001
Bacillota
Enterococcus casseliflavus EC20 [AKCC]
1421501
1421428
-
His
GTG
[ENA]
¡û
>W121086950
AKKS01000011
Bacillota
Enterococcus sp. C1 [AKKS]
715
788
+
His
GTG
[ENA]
¡û
>C131006178
CP003747
Bacillota
Bacillus cereus FRI-35 [CP003747]
1052364
1052289
-
His
GTG
[Ensembl]
¡û
>W1610620516
LHOX01000018
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
912
985
+
His
GTG
[ENA]
¡û
>W1610990608
LWMN01000016
Bacillota
Enterococcus thailandicus [LWMN]
786
859
+
His
GTG
[ENA]
¡û
>W1610990612
LWMN01000016
Bacillota
Enterococcus thailandicus [LWMN]
1208
1281
+
His
GTG
[ENA]
¡û
>W1710063802
BCPT01000009
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
144682
144609
-
His
GTG
[ENA]
¡û
>W1710064380
BCQE01000017
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
88472
88399
-
His
GTG
[ENA]
¡û
>W1710064618
BCQJ01000001
Bacillota
Enterococcus canis NBRC 100695 [BCQJ]
661
734
+
His
GTG
[ENA]
¡û
>W1710093791
CWML01000007
Bacillota
Enterococcus thailandicus monocytogenes [CWML]
983
1056
+
His
GTG
[ENA]
¡û
>W1710093795
CWML01000007
Bacillota
Enterococcus thailandicus monocytogenes [CWML]
1406
1479
+
His
GTG
[ENA]
¡û
>W1710659193
JXKH01000002
Bacillota
Enterococcus canis [JXKH]
685
758
+
His
GTG
[ENA]
¡û
>W1710659247
JXKK01000014
Bacillota
Enterococcus casseliflavus [JXKK]
131
204
+
His
GTG
[ENA]
¡û
>W1710659389
JXKP01000003
Bacillota
Enterococcus gallinarum [JXKP]
23121
23048
-
His
GTG
[ENA]
¡û
>W1710748210
LHOX01000018
Bacillota
Enterococcus sp. RIT-PI-f [LHOX]
912
985
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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