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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340021 (98 seq.)
>W1711187722
LWPS01000049
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
12077
12151
+
Glu
CTC
[ENA]
¡û
>W1711293936
LZYZ01000008
Bacillota
Clostridium saccharobutylicum [LZYZ]
267008
267082
+
Glu
CTC
[ENA]
¡û
>W1711293982
LZZA01000092
Bacillota
Clostridium saccharobutylicum [LZZA]
25775
25849
+
Glu
CTC
[ENA]
¡û
>W1711294494
LZZL01000010
Bacillota
Clostridium sp. BL-8 [LZZL]
75995
76069
+
Glu
CTC
[ENA]
¡û
>W131001734
AGYK01000006
Bacillota
Clostridium butyricum 60E.3 [AGYK]
322665
322739
+
Glu
CTC
[ENA]
¡û
>W131110769
APKZ01000012
Bacillota
Clostridium butyricum DKU-01 [APKZ]
82029
81955
-
Glu
CTC
[ENA]
¡û
>W131156812
AQQF01000053
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
18900
18974
+
Glu
CTC
[ENA]
¡û
>W131232777
AUJN01000012
Bacillota
Clostridium butyricum AGR2140 [AUJN]
46223
46149
-
Glu
CTC
[ENA]
¡û
>C171021728
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3209503
3209577
+
Glu
CTC
-
¡û
>C171045617
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
3597791
3597865
+
Glu
CTC
-
¡û
>C171045685
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
3634139
3634213
+
Glu
CTC
-
¡û
>C171045774
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
3598403
3598477
+
Glu
CTC
-
¡û
>C171045943
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
3451652
3451726
+
Glu
CTC
-
¡û
>C171046028
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
3598402
3598476
+
Glu
CTC
-
¡û
>C171047585
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
2820433
2820507
+
Glu
CTC
-
¡û
>C171059535
CP017253
Bacillota
Clostridium taeniosporum 1/k [CP017253]
2478646
2478720
+
Glu
CTC
-
¡û
>W131092133
AOIF01000053
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
5573
5499
-
Glu
CTC
[ENA]
¡û
>WENV180121477
OASR01010029
[OASR] human gut metagenome; faeces
50
124
+
Glu
CTC
[ENA]
¢þ
>WENV180124356
OASX01009239
[OASX] human gut metagenome; faeces
104
178
+
Glu
CTC
[ENA]
¢þ
>WENV180129301
OATC01000554
[OATC] human gut metagenome; faeces
7746
7820
+
Glu
CTC
[ENA]
¢þ
>WENV180197891
OBAB01030535
[OBAB] human gut metagenome; faeces
317
246
-
Glu
CTC
[ENA]
¢þ
>WENV180278918
OBHX01010738
[OBHX] metagenome; feces
2664
2738
+
Glu
CTC
[ENA]
¢þ
>WENV180333363
OBLF01000609
[OBLF] metagenome; feces
37346
37420
+
Glu
CTC
[ENA]
¢þ
>WENV180349443
OBLO01045894
[OBLO] metagenome; feces
189
263
+
Glu
CTC
[ENA]
¢þ
>WENV180444354
OBWZ01001721
[OBWZ] human gut metagenome; faeces
3124
3050
-
Glu
CTC
[ENA]
¢þ
>WENV180505010
OCAO01000518
[OCAO] human gut metagenome; faeces
11454
11380
-
Glu
CTC
[ENA]
¢þ
>WENV180506779
OCAS01008296
[OCAS] human gut metagenome; faeces
1534
1460
-
Glu
CTC
[ENA]
¢þ
>W08001344
ABDT01000093
Bacillota
Clostridium butyricum 5521 [ABDT]
15638
15712
+
Glu
CTC
[ENA]
¡û
>WENV181436142
OGDF01011255
[OGDF] human gut metagenome; human gut
270
344
+
Glu
CTC
[ENA]
¢þ
>WENV181555256
OGIT01000389
[OGIT] metagenome; Human gut stool
18848
18922
+
Glu
CTC
[ENA]
¢þ
>WENV181798335
OGRV01000038
[OGRV] human gut metagenome; fecal sample 3 from infant 4
30481
30407
-
Glu
CTC
[ENA]
¢þ
>WENV181798907
OGRX01001385
[OGRX] human gut metagenome; fecal sample 2 from infant 8
2849
2775
-
Glu
CTC
[ENA]
¢þ
>WENV181801378
OGSB01000192
[OGSB] human gut metagenome; fecal sample 5 from infant 3
26118
26192
+
Glu
CTC
[ENA]
¢þ
>WENV181802028
OGSC01001401
[OGSC] human gut metagenome; fecal sample 8 from infant 5
3541
3467
-
Glu
CTC
[ENA]
¢þ
>WENV181805169
OGSH01001125
[OGSH] human gut metagenome; fecal sample 5 from infant 6
1811
1885
+
Glu
CTC
[ENA]
¢þ
>WENV181805396
OGSI01000358
[OGSI] human gut metagenome; fecal sample 4 from infant 8
14198
14272
+
Glu
CTC
[ENA]
¢þ
>WENV181805829
OGSJ01000683
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
1810
1884
+
Glu
CTC
[ENA]
¢þ
>WENV181807130
OGSN01003230
[OGSN] human gut metagenome; fecal sample 7 from infant 8
33
107
+
Glu
CTC
[ENA]
¢þ
>WENV181807919
OGSQ01001161
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
3311
3237
-
Glu
CTC
[ENA]
¢þ
>WENV181809372
OGST01000045
[OGST] human gut metagenome; fecal sample 7 from infant 6
60089
60015
-
Glu
CTC
[ENA]
¢þ
>WENV181810604
OGSV01000339
[OGSV] human gut metagenome; fecal sample 4 from infant 3
1785
1859
+
Glu
CTC
[ENA]
¢þ
>WENV181811063
OGSX01004566
[OGSX] human gut metagenome; fecal sample 1 from infant 8
897
823
-
Glu
CTC
[ENA]
¢þ
>WENV181811179
OGSY01000119
[OGSY] human gut metagenome; fecal sample 5 from infant 8
60089
60015
-
Glu
CTC
[ENA]
¢þ
>WENV181811604
OGSZ01000069
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
60089
60015
-
Glu
CTC
[ENA]
¢þ
>WENV181813795
OGTD01001252
[OGTD] human gut metagenome; fecal sample 1 from infant 3
1714
1788
+
Glu
CTC
[ENA]
¢þ
>WENV181814075
OGTE01003873
[OGTE] human gut metagenome; fecal sample 2 from infant 3
249
323
+
Glu
CTC
[ENA]
¢þ
>WENV181814456
OGTG01000176
[OGTG] human gut metagenome; fecal sample 1 from infant 4
30489
30415
-
Glu
CTC
[ENA]
¢þ
>WENV181815045
OGTI01000188
[OGTI] human gut metagenome; fecal sample 5 from infant 1
18820
18894
+
Glu
CTC
[ENA]
¢þ
>WENV181817479
OGTN01000208
[OGTN] human gut metagenome; fecal sample 5 from infant 4
30461
30387
-
Glu
CTC
[ENA]
¢þ
>WENV181818229
OGTS01000045
[OGTS] human gut metagenome; fecal sample 4 from infant 4
30489
30415
-
Glu
CTC
[ENA]
¢þ
>WENV181818677
OGTT01001616
[OGTT] human gut metagenome; fecal sample 6 from infant 8
2820
2746
-
Glu
CTC
[ENA]
¢þ
>WENV181818896
OGTU01000114
[OGTU] human gut metagenome; fecal sample 6 from infant 4
1808
1882
+
Glu
CTC
[ENA]
¢þ
>WENV181823009
OGUH01002919
[OGUH] human gut metagenome; fecal sample 3 from infant 3
1589
1515
-
Glu
CTC
[ENA]
¢þ
>W141206253
AZLX01000176
Bacillota
Clostridium butyricum DORA_1 [AZLX]
3602
3676
+
Glu
CTC
[ENA]
¡û
>W141259006
CBYK010000007
Bacillota
Clostridium butyricum [CBYK]
90490
90416
-
Glu
CTC
[ENA]
¡û
>WENV182613918
OJKA01033795
[OJKA] metagenome; faeces
223
152
-
Glu
CTC
[ENA]
¢þ
>WENV182617452
OJKD01008826
[OJKD] metagenome; faeces
554
480
-
Glu
CTC
[ENA]
¢þ
>WENV182665589
OJNH01001057
[OJNH] human gut metagenome; feces
18631
18557
-
Glu
CTC
[ENA]
¢þ
>WENV182823437
OKBT01006309
[OKBT] human gut metagenome; human gut
97
171
+
Glu
CTC
[ENA]
¢þ
>WENV182865667
OKQK01006613
[OKQK] human gut metagenome; human gut
718
644
-
Glu
CTC
[ENA]
¢þ
>WENV182952943
OKVX01000723
[OKVX] human gut metagenome; human gut
229
155
-
Glu
CTC
[ENA]
¢þ
>WENV183067236
OLIL01020565
[OLIL] metagenome; faeces
258
184
-
Glu
CTC
[ENA]
¢þ
>WENV183069207
OLIQ01089553
[OLIQ] metagenome; faeces
218
144
-
Glu
CTC
[ENA]
¢þ
>WENV183780967
PPYF01188991
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3523
3597
+
Glu
CTC
[ENA]
¢þ
>C191128959
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
3539920
3539849
-
Glu
CTC
-
¡û
>C191171197
CP039702
Bacillota
Clostridium butyricum [CP039702]
2921762
2921836
+
Glu
CTC
-
¡û
>C191171321
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2835467
2835393
-
Glu
CTC
-
¡û
>W09132870
ACOM01000005
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
130153
130079
-
Glu
CTC
[ENA]
¡û
>C141007635
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
3598401
3598475
+
Glu
CTC
[Ensembl]
¡û
>W1910637973
LRDH01000077
Bacillota
Clostridium butyricum 300064 [LRDH]
25196
25122
-
Glu
CTC
[ENA]
¡û
>W1810052481
PDCI01000035
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
13921
13995
+
Glu
CTC
[ENA]
¡û
>W1810052520
PDCJ01000001
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
360657
360583
-
Glu
CTC
[ENA]
¡û
>W1810250539
PQCS01000068
Bacillota
Clostridium sp. 3-3 [PQCS]
18725
18799
+
Glu
CTC
[ENA]
¡û
>W1810805957
QRUG01000021
Bacillota
Clostridium butyricum AF25-25 [QRUG]
48446
48520
+
Glu
CTC
[ENA]
¡û
>W10118861
ADVF01000012
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
11005
10934
-
Glu
CTC
[ENA]
¡û
>C11105605
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
2881642
2881571
-
Glu
CTC
[Ensembl]
¡û
>W1510725274
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1678633
1678560
-
Glu
CTC
[ENA]
¡û
>W1511350230
JRMA01000075
Bacillota
Clostridium butyricum INCQS635 [JRMA]
29358
29432
+
Glu
CTC
[ENA]
¡û
>W1511365579
JSEG01000005
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
154509
154435
-
Glu
CTC
[ENA]
¡û
>W11125033
ADVF01000012
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
11005
10934
-
Glu
CTC
[ENA]
¡û
>W1511554772
JZWE01000113
Bacillota
Clostridium sp. IBUN22A [JZWE]
26112
26186
+
Glu
CTC
[ENA]
¡û
>W1511554801
JZWF01000008
Bacillota
Clostridium sp. IBUN125C [JZWF]
131369
131295
-
Glu
CTC
[ENA]
¡û
>W1511554898
JZWG01000143
Bacillota
Clostridium sp. IBUN13A [JZWG]
26989
27063
+
Glu
CTC
[ENA]
¡û
>W1511554923
JZWH01000012
Bacillota
Clostridium sp. IBUN62F [JZWH]
130793
130719
-
Glu
CTC
[ENA]
¡û
>W11176310
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
2343429
2343355
-
Glu
CTC
[ENA]
¡û
>C161054164
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
3174053
3174127
+
Glu
CTC
-
¡û
>C161055917
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
2842862
2842936
+
Glu
CTC
-
¡û
>C161076431
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
2845925
2845999
+
Glu
CTC
-
¡û
>W1610020623
ASPQ01000098
Bacillota
Clostridium butyricum CWBI1009 [ASPQ]
13896
13822
-
Glu
CTC
[ENA]
¡û
>W1610030606
AYXL01000115
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
26290
26364
+
Glu
CTC
[ENA]
¡û
>W1610046308
BBCG01000009
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
4283
4212
-
Glu
CTC
[ENA]
¡û
>C131012945
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
3941522
3941596
+
Glu
CTC
[Ensembl]
¡û
>W1610627642
LIDW01000003
Bacillota
Clostridium butyricum [LIDW]
56619
56693
+
Glu
CTC
[ENA]
¡û
>W1710027729
AYXL01000115
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
26290
26364
+
Glu
CTC
[ENA]
¡û
>W1710043104
BBCG01000009
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
4283
4212
-
Glu
CTC
[ENA]
¡û
>W1710115323
CZLD01000018
Bacillota
Clostridium neonatale [CZLD]
358004
357930
-
Glu
CTC
[ENA]
¡û
>W1710558959
FOMG01000016
Bacillota
Clostridium uliginosum [FOMG]
63625
63551
-
Glu
CTC
[ENA]
¡û
>W1710758769
LIDW01000003
Bacillota
Clostridium butyricum [LIDW]
56619
56693
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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