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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340110 (66 seq.)
>W1710923807
LOCK01000017
Bacillota
Desulfitobacterium hafniense [LOCK]
193814
193740
-
Asn
GTT
[ENA]
¡û
>W1710923830
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
207
133
-
Asn
GTT
[ENA]
¡û
>W1711259319
LYVF01000047
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
110849
110923
+
Asn
GTT
[ENA]
¡û
>W1711259329
LYVF01000069
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
337
411
+
Asn
GTT
[ENA]
¡û
>W131242996
CAOS01000013
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
279802
279876
+
Asn
GTT
[ENA]
¡û
>W131160383
AQWN01000010
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
104730
104656
-
Asn
GTT
[ENA]
¡û
>W131162719
AQZD01000009
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
244015
244089
+
Asn
GTT
[ENA]
¡û
>W131162737
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
2657
2583
-
Asn
GTT
[ENA]
¡û
>W131162839
AQZF01000024
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
283741
283667
-
Asn
GTT
[ENA]
¡û
>W131164679
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
14692
14618
-
Asn
GTT
[ENA]
¡û
>W131164695
ARAZ01000035
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
27718
27792
+
Asn
GTT
[ENA]
¡û
>W131160397
AQWN01000015
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
2092
2166
+
Asn
GTT
[ENA]
¡û
>C007799
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1723920
1723994
+
Asn
GTT
[Ensembl]
¡û
>C007815
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
3445818
3445744
-
Asn
GTT
[Ensembl]
¡û
>C008038
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
2679838
2679764
-
Asn
GTT
[Ensembl]
¡û
>C018166
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
288112
288186
+
Asn
GTT
[Ensembl]
¡û
>C018178
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
927558
927632
+
Asn
GTT
[Ensembl]
¡û
>WENV180345907
OBLN01010541
[OBLN] sediment metagenome; sediment
902
976
+
Asn
GTT
[ENA]
¢þ
>w002206
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
68152
68076
-
Asn
GTT
[ENA]
¡û
>w002191
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
71303
71227
-
Asn
GTT
[ENA]
¡û
>w002141
AAAW04000001
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
1587870
1587794
-
Asn
GTT
[ENA]
¡û
>WENV170019911
BBPE01001382
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1701
1627
-
Asn
GTT
[ENA]
¢þ
>WENV170021318
BBPF01006054
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
71
145
+
Asn
GTT
[ENA]
¢þ
>WENV170021939
BBPG01005454
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
71
145
+
Asn
GTT
[ENA]
¢þ
>WENV170677646
LDZT01007639
[LDZT] terrestrial metagenome; oil reservoir sample SB1
378
304
-
Asn
GTT
[ENA]
¢þ
>C181166298
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
114759
114833
+
Asn
GTT
-
¡û
>C181166302
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
966345
966419
+
Asn
GTT
-
¡û
>C181166357
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
1936813
1936739
-
Asn
GTT
-
¡û
>C181166371
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
115152
115226
+
Asn
GTT
-
¡û
>C181166375
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
989387
989461
+
Asn
GTT
-
¡û
>C181166380
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
1219121
1219195
+
Asn
GTT
-
¡û
>C181166431
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
1993281
1993207
-
Asn
GTT
-
¡û
>W09105156
AAOP01000012
Bacillota
Desulforamulus reducens MI-1 [AAOP]
50
124
+
Asn
GTT
[ENA]
¡û
>W09126264
ACJM01000032
Bacillota
Dethiobacter alkaliphilus AHT 1 [ACJM]
822
896
+
Asn
GTT
[ENA]
¡û
>W09135923
BAAC01000171
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
30365
30439
+
Asn
GTT
[ENA]
¡û
>W1910004961
AWVY01000035
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
31135
31209
+
Asn
GTT
[ENA]
¡û
>C09103995
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2798599
2798673
+
Asn
GTT
[Ensembl]
¡û
>C09104010
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2801750
2801824
+
Asn
GTT
[Ensembl]
¡û
>C09104025
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
4459986
4459912
-
Asn
GTT
[Ensembl]
¡û
>C11107331
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
1204711
1204785
+
Asn
GTT
[Ensembl]
¡û
>W1511644730
LDXJ01000062
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
64172
64246
+
Asn
GTT
[ENA]
¡û
>C121011436
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2107619
2107693
+
Asn
GTT
[Ensembl]
¡û
>C121011451
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2109281
2109355
+
Asn
GTT
[Ensembl]
¡û
>C121011467
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
3573216
3573142
-
Asn
GTT
[Ensembl]
¡û
>W121007265
AFZX01000024
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
343
417
+
Asn
GTT
[ENA]
¡û
>W121007287
AFZX01000131
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
96454
96380
-
Asn
GTT
[ENA]
¡û
>W121010512
AGJH01000001
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
89827
89753
-
Asn
GTT
[ENA]
¡û
>W121010556
AGJH01000057
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
347
273
-
Asn
GTT
[ENA]
¡û
>W1610614095
LGGS01000075
Bacillota
Pelotomaculum thermopropionicum [LGGS]
378
304
-
Asn
GTT
[ENA]
¡û
>W1610781408
LOCK01000017
Bacillota
Desulfitobacterium hafniense [LOCK]
193814
193740
-
Asn
GTT
[ENA]
¡û
>W1610781431
LOCK01000048
Bacillota
Desulfitobacterium hafniense [LOCK]
207
133
-
Asn
GTT
[ENA]
¡û
>W1611021408
LYVF01000047
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
110849
110923
+
Asn
GTT
[ENA]
¡û
>W1611021418
LYVF01000069
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
337
411
+
Asn
GTT
[ENA]
¡û
>W1710084344
BDLQ01000022
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
100720
100646
-
Asn
GTT
[ENA]
¡û
>W1710084372
BDLQ01000151
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
194
120
-
Asn
GTT
[ENA]
¡û
>W1710084379
BDLR01000015
Bacillota
Carboxydocella sp. JDF658 [BDLR]
29843
29917
+
Asn
GTT
[ENA]
¡û
>W1710084425
BDLR01000093
Bacillota
Carboxydocella sp. JDF658 [BDLR]
174
100
-
Asn
GTT
[ENA]
¡û
>W1710583644
FQUY01000019
Bacillota
Desulforamulus putei DSM 12395 [FQUY]
20399
20473
+
Asn
GTT
[ENA]
¡û
>W1710586460
FQXF01000012
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
85586
85512
-
Asn
GTT
[ENA]
¡û
>W1710590064
FRAR01000024
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
77423
77497
+
Asn
GTT
[ENA]
¡û
>W1710593519
FRDN01000011
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
42612
42686
+
Asn
GTT
[ENA]
¡û
>W1710593552
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
80562
80488
-
Asn
GTT
[ENA]
¡û
>W1710601635
FUXM01000003
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
103
177
+
Asn
GTT
[ENA]
¡û
>W1710601657
FUXM01000008
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
57583
57509
-
Asn
GTT
[ENA]
¡û
>W1710601662
FUXM01000017
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
193
267
+
Asn
GTT
[ENA]
¡û
>W1710735178
LGGS01000075
Bacillota
Pelotomaculum thermopropionicum [LGGS]
378
304
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK