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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340345 (70 seq.)
>W1710860542
LMCY01000043
Betaproteobacteria
Massilia sp. Root335 [LMCY]
33764
33838
+
Arg
CCT
[ENA]
¡û
>W1710863113
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
38958
39032
+
Arg
CCT
[ENA]
¡û
>W1710864682
LMGB01000013
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
220563
220489
-
Arg
CCT
[ENA]
¡û
>W1710890878
LNCE01000012
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
59323
59249
-
Arg
CCT
[ENA]
¡û
>W1711033379
LRHW01000004
Betaproteobacteria
Janthinobacterium lividum [LRHW]
65904
65978
+
Arg
CCT
[ENA]
¡û
>W1711033498
LRHX01000022
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
276878
276952
+
Arg
CCT
[ENA]
¡û
>W1711033501
LRHY01000011
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
27255
27329
+
Arg
CCT
[ENA]
¡û
>W1711033579
LRHZ01000006
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
258946
259020
+
Arg
CCT
[ENA]
¡û
>W1711033681
LRIA01000131
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
34354
34280
-
Arg
CCT
[ENA]
¡û
>W1711033718
LRIB01000039
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
100614
100540
-
Arg
CCT
[ENA]
¡û
>W1711033764
LRIC01000025
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
109007
109081
+
Arg
CCT
[ENA]
¡û
>W1711033815
LRID01000068
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
56742
56816
+
Arg
CCT
[ENA]
¡û
>W131219556
ATYR01000005
Betaproteobacteria
Massilia alkalitolerans DSM 17462 [ATYR]
85271
85197
-
Arg
CCT
[ENA]
¡û
>W1711308608
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
497278
497204
-
Arg
CCT
[ENA]
¡û
>W131237826
AUSC01000146
Betaproteobacteria
Oxalobacteraceae bacterium JGI 001010-B17 [AUSC]
7108
7034
-
Arg
CCT
[ENA]
¡û
>W1712004452
NEGX01000015
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
97108
97034
-
Arg
CCT
[ENA]
¡û
>W1712004522
NEGY01000009
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
97135
97061
-
Arg
CCT
[ENA]
¡û
>W1712004625
NEGZ01000030
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
41407
41333
-
Arg
CCT
[ENA]
¡û
>W1712004690
NEHA01000024
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
33239
33313
+
Arg
CCT
[ENA]
¡û
>W1712004755
NEHB01000007
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
97563
97489
-
Arg
CCT
[ENA]
¡û
>C171010519
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
4614441
4614367
-
Arg
CCT
-
¡û
>C171088496
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
5829367
5829441
+
Arg
CCT
-
¡û
>C171094970
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
1823135
1823209
+
Arg
CCT
-
¡û
>WENV180024846
FTIJ01145465
[FTIJ] metagenome; soil
456
382
-
Arg
CCT
[ENA]
¢þ
>WENV183726560
PJTO01000011
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
385449
385375
-
Arg
CCT
[ENA]
¢þ
>WENV183728133
PJTP01041606
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
140
66
-
Arg
CCT
[ENA]
¢þ
>WENV183728335
PJTQ01000019
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
385449
385375
-
Arg
CCT
[ENA]
¢þ
>WENV183737148
PJUD01000621
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
10689
10763
+
Arg
CCT
[ENA]
¢þ
>WENV183740735
PJUF01007997
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
292
218
-
Arg
CCT
[ENA]
¢þ
>WENV183741016
PJUF01028153
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
293
219
-
Arg
CCT
[ENA]
¢þ
>W141484445
JFYR01000007
Betaproteobacteria
Janthinobacterium lividum [JFYR]
100622
100548
-
Arg
CCT
[ENA]
¡û
>C181081107
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
1926301
1926375
+
Arg
CCT
-
¡û
>C191098103
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
1174498
1174572
+
Arg
CCT
-
¡û
>C191188150
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
5683171
5683245
+
Arg
CCT
-
¡û
>W141739272
JNNN01000078
Betaproteobacteria
Massilia sp. LC238 [JNNN]
176226
176300
+
Arg
CCT
[ENA]
¡û
>W141811328
JPXI01000040
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
86921
86995
+
Arg
CCT
[ENA]
¡û
>W141821522
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
5905319
5905393
+
Arg
CCT
[ENA]
¡û
>W1910942587
NJGY01000004
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
72098
72024
-
Arg
CCT
[ENA]
¡û
>W1911199886
NRDQ01000085
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
20053
19979
-
Arg
CCT
[ENA]
¡û
>W1911802857
QYUP01000120
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
49136
49210
+
Arg
CCT
[ENA]
¡û
>W1810068155
PDZI01000003
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
98934
98860
-
Arg
CCT
[ENA]
¡û
>W1810068275
PDZJ01000003
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
100015
99941
-
Arg
CCT
[ENA]
¡û
>W1810068356
PDZK01000003
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
98632
98558
-
Arg
CCT
[ENA]
¡û
>W1810068576
PDZN01000014
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
102894
102968
+
Arg
CCT
[ENA]
¡û
>W1810068655
PDZO02000012
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
95804
95878
+
Arg
CCT
[ENA]
¡û
>W1810069731
PEBS01000005
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
99837
99763
-
Arg
CCT
[ENA]
¡û
>W1810071326
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
1557986
1557912
-
Arg
CCT
[ENA]
¡û
>W1810121274
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
5307268
5307342
+
Arg
CCT
[ENA]
¡û
>W1810330146
PUIP01000014
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
168774
168848
+
Arg
CCT
[ENA]
¡û
>C151100180
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
4335448
4335374
-
Arg
CCT
[Ensembl]
¡û
>W1511310202
JPQD01000026
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
12995
12921
-
Arg
CCT
[ENA]
¡û
>W1511355688
JRRH01000014
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
234488
234562
+
Arg
CCT
[ENA]
¡û
>W1511588750
LBCO01000010
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
98177
98103
-
Arg
CCT
[ENA]
¡û
>W121031800
AHHB01000021
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
122532
122606
+
Arg
CCT
[ENA]
¡û
>W1610070468
BCTH01000014
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
59599
59525
-
Arg
CCT
[ENA]
¡û
>W1610722888
LMCY01000043
Betaproteobacteria
Massilia sp. Root335 [LMCY]
33764
33838
+
Arg
CCT
[ENA]
¡û
>W1610725459
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
38958
39032
+
Arg
CCT
[ENA]
¡û
>W1610727028
LMGB01000013
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
220563
220489
-
Arg
CCT
[ENA]
¡û
>W1610751274
LNCE01000012
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
59323
59249
-
Arg
CCT
[ENA]
¡û
>W1611056236
MAQB01000013
Betaproteobacteria
Janthinobacterium lividum [MAQB]
146865
146791
-
Arg
CCT
[ENA]
¡û
>W1710067841
BCTH01000014
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
59599
59525
-
Arg
CCT
[ENA]
¡û
>W1710509345
FMXD01000003
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
528969
529043
+
Arg
CCT
[ENA]
¡û
>W1710512808
FMZS01000002
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
460101
460175
+
Arg
CCT
[ENA]
¡û
>W1710517070
FNDA01000005
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
98373
98299
-
Arg
CCT
[ENA]
¡û
>W1710522216
FNHA01000008
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
210452
210526
+
Arg
CCT
[ENA]
¡û
>W1710556742
FOKL01000002
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
246905
246831
-
Arg
CCT
[ENA]
¡û
>W1710557589
FOLD01000015
Betaproteobacteria
Massilia yuzhufengensis [FOLD]
38998
39072
+
Arg
CCT
[ENA]
¡û
>W1710581699
FPKH01000002
Betaproteobacteria
Janthinobacterium lividum [FPKH]
498317
498391
+
Arg
CCT
[ENA]
¡û
>W1710596856
FTMV01000004
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
262181
262255
+
Arg
CCT
[ENA]
¡û
>W1710720665
LFKP01000011
Betaproteobacteria
Janthinobacterium lividum [LFKP]
86600
86526
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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