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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340466 (22 seq.)
>W1711401505
MFPM01000019
Unclassified
Candidatus Levybacteria bacterium RIFOXYA1_FULL_41_10 [MFPM]
14104
14030
-
Thr
TGT
[ENA]
¡û
>W1711401518
MFPN01000004
Unclassified
Candidatus Levybacteria bacterium RIFOXYB1_FULL_40_17 [MFPN]
7702
7628
-
Thr
TGT
[ENA]
¡û
>W1711401585
MFPO01000019
Unclassified
Candidatus Levybacteria bacterium RIFOXYC1_FULL_40_10 [MFPO]
41894
41820
-
Thr
TGT
[ENA]
¡û
>W1711401619
MFPP01000017
Unclassified
Candidatus Levybacteria bacterium RIFOXYD1_FULL_40_21 [MFPP]
10811
10737
-
Thr
TGT
[ENA]
¡û
>W1711406814
MGHR01000025
Unclassified
Candidatus Woesebacteria bacterium RIFOXYA1_FULL_38_9 [MGHR]
5168
5242
+
Thr
TGT
[ENA]
¡û
>W1711407009
MGHY01000013
Unclassified
Candidatus Woesebacteria bacterium RIFOXYB1_FULL_38_16 [MGHY]
3627
3553
-
Thr
TGT
[ENA]
¡û
>WENV183696321
ORMF012539528
[ORMF] groundwater metagenome; groundwater
269
197
-
Thr
TGT
[ENA]
¢þ
>W1910711506
MFNK01000008
Unclassified
Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_36_15b [MFNK]
35519
35591
+
Thr
TGT
[ENA]
¡û
>W1910711558
MFNL01000004
Unclassified
Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_37_17 [MFNL]
59744
59670
-
Thr
TGT
[ENA]
¡û
>W1910711821
MFNU01000052
Unclassified
Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_40_83 [MFNU]
10179
10251
+
Thr
TGT
[ENA]
¡û
>W1910712025
MFOD01000003
Unclassified
Candidatus Levybacteria bacterium RIFCSPHIGHO2_02_FULL_40_29 [MFOD]
10818
10746
-
Thr
TGT
[ENA]
¡û
>W1910712293
MFOL01000043
Unclassified
Candidatus Levybacteria bacterium RIFCSPHIGHO2_12_FULL_40_44 [MFOL]
9796
9868
+
Thr
TGT
[ENA]
¡û
>W1910712362
MFON01000005
Unclassified
Candidatus Levybacteria bacterium RIFCSPLOWO2_01_FULL_36_13 [MFON]
35512
35584
+
Thr
TGT
[ENA]
¡û
>W1910712569
MFOU01000006
Unclassified
Candidatus Levybacteria bacterium RIFCSPLOWO2_01_FULL_38_23 [MFOU]
87787
87713
-
Thr
TGT
[ENA]
¡û
>W1910712723
MFOY01000056
Unclassified
Candidatus Levybacteria bacterium RIFCSPLOWO2_01_FULL_40_96 [MFOY]
9799
9871
+
Thr
TGT
[ENA]
¡û
>W1910712910
MFPF01000007
Unclassified
Candidatus Levybacteria bacterium RIFCSPLOWO2_02_FULL_40_18 [MFPF]
5251
5323
+
Thr
TGT
[ENA]
¡û
>W1910713082
MFPL01000010
Unclassified
Candidatus Levybacteria bacterium RIFCSPLOWO2_12_FULL_41_12 [MFPL]
10817
10745
-
Thr
TGT
[ENA]
¡û
>W1511602889
LBWU01000027
Unclassified
Candidatus Levybacteria bacterium GW2011_GWA1_39_32 bacterium GW2011_GWA1_39_32 [LBWU]
7676
7602
-
Thr
TGT
[ENA]
¡û
>W1511604156
LBYL01000012
Unclassified
Candidatus Levybacteria bacterium GW2011_GWC1_40_19 bacterium GW2011_GWC1_40_19 [LBYL]
10467
10393
-
Thr
TGT
[ENA]
¡û
>W1511604940
LBZN01000022
Unclassified
Candidatus Levybacteria bacterium GW2011_GWC2_40_7 bacterium GW2011_GWC2_40_7 [LBZN]
17584
17658
+
Thr
TGT
[ENA]
¡û
>W1511605802
LCAR01000021
Unclassified
Candidatus Levybacteria bacterium GW2011_GWA2_41_15 bacterium GW2011_GWA2_41_15 [LCAR]
14322
14248
-
Thr
TGT
[ENA]
¡û
>W1511606030
LCAY01000021
Unclassified
Candidatus Levybacteria bacterium GW2011_GWB1_41_21 bacterium GW2011_GWB1_41_21 [LCAY]
7826
7752
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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