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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3405 (40 seq.)
>W1711096468
LTHT01000268
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
5509
5415
-
SeC
TCA
[ENA]
¡û
>WENV181047504
ODXZ01010182
[ODXZ] human metagenome; G_DNA_Stool
330
424
+
SeC
TCA
[ENA]
¢þ
>WENV181428121
OGCU01002049
[OGCU] metagenome; Human gut stool
4641
4547
-
SeC
TCA
[ENA]
¢þ
>WENV181458872
OGEK01000912
[OGEK] metagenome; Human gut stool
20359
20453
+
SeC
TCA
[ENA]
¢þ
>WENV181467277
OGER01001674
[OGER] metagenome; Human gut stool
5598
5504
-
SeC
TCA
[ENA]
¢þ
>WENV181471080
OGEU01065014
[OGEU] metagenome; Human gut stool
65
159
+
SeC
TCA
[ENA]
¢þ
>WENV181474217
OGFC01003400
[OGFC] metagenome; Human gut stool
4592
4498
-
SeC
TCA
[ENA]
¢þ
>WENV181557983
OGIW01000962
[OGIW] metagenome; Human gut stool
10215
10309
+
SeC
TCA
[ENA]
¢þ
>WENV181560608
OGJC01000664
[OGJC] metagenome; Human gut stool
19516
19610
+
SeC
TCA
[ENA]
¢þ
>WENV181561335
OGJD01001330
[OGJD] metagenome; Human gut stool
4070
3976
-
SeC
TCA
[ENA]
¢þ
>WENV181579704
OGJZ01000702
[OGJZ] metagenome; Human gut stool
30877
30971
+
SeC
TCA
[ENA]
¢þ
>WENV181582649
OGKB01032241
[OGKB] metagenome; Human gut stool
221
127
-
SeC
TCA
[ENA]
¢þ
>WENV181627734
OGMN01004385
[OGMN] metagenome; Human gut stool
709
803
+
SeC
TCA
[ENA]
¢þ
>WENV181634788
OGMW01021605
[OGMW] metagenome; Human gut stool
1109
1015
-
SeC
TCA
[ENA]
¢þ
>WENV181900654
OGXV01027651
[OGXV] human gut metagenome; faeces
1187
1281
+
SeC
TCA
[ENA]
¢þ
>WENV181947711
OGZD01023668
[OGZD] human gut metagenome; faeces
137
43
-
SeC
TCA
[ENA]
¢þ
>WENV181948036
OGZE01000220
[OGZE] human gut metagenome; faeces
19655
19749
+
SeC
TCA
[ENA]
¢þ
>WENV181960068
OGZN01012508
[OGZN] human gut metagenome; faeces
1182
1276
+
SeC
TCA
[ENA]
¢þ
>WENV181965594
OGZT01001605
[OGZT] human gut metagenome; faeces
10155
10249
+
SeC
TCA
[ENA]
¢þ
>WENV181971029
OGZY01001206
[OGZY] human gut metagenome; faeces
6410
6316
-
SeC
TCA
[ENA]
¢þ
>WENV181986837
OHAM01005116
[OHAM] human gut metagenome; faeces
1272
1366
+
SeC
TCA
[ENA]
¢þ
>WENV181994382
OHAS01033164
[OHAS] human gut metagenome; faeces
185
91
-
SeC
TCA
[ENA]
¢þ
>WENV182866747
OKRR01001158
[OKRR] human gut metagenome; faeces
20098
20192
+
SeC
TCA
[ENA]
¢þ
>WENV183290427
OLSH01000271
[OLSH] human gut metagenome; faeces
4616
4522
-
SeC
TCA
[ENA]
¢þ
>WENV183502137
OMGS01049466
[OMGS] human gut metagenome; human gut
342
436
+
SeC
TCA
[ENA]
¢þ
>WENV183760962
PPYE01248441
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
196
102
-
SeC
TCA
[ENA]
¢þ
>WENV183764062
PPYE01312989
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
4846
4752
-
SeC
TCA
[ENA]
¢þ
>WENV183780504
PPYF01171794
[PPYF] human gut metagenome; stool from patient with Crohn's disease
34627
34721
+
SeC
TCA
[ENA]
¢þ
>C181003938
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
2840470
2840376
-
SeC
TCA
-
¡û
>C181161036
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
208340
208246
-
SeC
TCA
-
¡û
>C181161053
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
2350490
2350584
+
SeC
TCA
-
¡û
>C181216749
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
799464
799558
+
SeC
TCA
-
¡û
>C191210207
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
619281
619375
+
Sec
TCA
-
¡û
>C191219254
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
521927
522021
+
Sec
TCA
-
¡û
>W09118771
ACDH01000035
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
47861
47955
+
SeC
TCA
[ENA]
¡û
>W09125158
ACIE01000004
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
130266
130172
-
SeC
TCA
[ENA]
¡û
>W1810791372
QRIG01000035
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
19510
19604
+
Sec
TCA
[ENA]
¡û
>W1810818410
QSDE01000046
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
10573
10667
+
Sec
TCA
[ENA]
¡û
>W1810832211
QSOW01000005
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
119769
119675
-
Sec
TCA
[ENA]
¡û
>W121021747
AGWJ01000037
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
30910
30816
-
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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