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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340619 (12 seq.)
>C171101104
CP019936
Gammaproteobacteria
Chromatiaceae bacterium 2141T.STBD.0c.01a [CP019936]
3652070
3651994
-
Arg
ACG
-
¡û
>W131109253
APHR01000037
Gammaproteobacteria
Methylophaga lonarensis MPL [APHR]
5147
5071
-
Arg
ACG
[ENA]
¡û
>W131169972
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
1357845
1357921
+
Arg
ACG
[ENA]
¡û
>WENV170980452
MWSA01003141
[MWSA] mollusc metagenome; gill 40 cm from animal A
5
81
+
Arg
ACG
[ENA]
¢þ
>WENV170980521
MWSB01002770
[MWSB] mollusc metagenome; gill 31 cm from animal A
5
81
+
Arg
ACG
[ENA]
¢þ
>WENV170980534
MWSC01000033
[MWSC] mollusc metagenome; gill 70 cm from animal B
865
789
-
Arg
ACG
[ENA]
¢þ
>WENV170980607
MWSD01000009
[MWSD] mollusc metagenome; gill 40 cm from animal B
37300
37376
+
Arg
ACG
[ENA]
¢þ
>WENV170980697
MWSE01000057
[MWSE] mollusc metagenome; gill 28 cm from animal B
15032
14956
-
Arg
ACG
[ENA]
¢þ
>C181113466
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1428951
1428875
-
Arg
ACG
-
¡û
>C121004915
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2570646
2570570
-
Arg
ACG
[Ensembl]
¡û
>C121004916
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2570546
2570470
-
Arg
ACG
[Ensembl]
¡û
>C121011843
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
223214
223290
+
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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