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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340854 (133 seq.)
>W1710865579
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
2382725
2382798
+
Glu
TTC
[ENA]
¡û
>W1710874530
LMNR01000002
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
1016215
1016290
+
Glu
TTC
[ENA]
¡û
>W1710874610
LMNT01000002
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
274984
274909
-
Glu
TTC
[ENA]
¡û
>W131218481
ATXT01000016
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
55819
55892
+
Glu
TTC
[ENA]
¡û
>W131225010
AUDF01000010
Actinomycetota
Rathayibacter toxicus DSM 7488 [AUDF]
72142
72215
+
Glu
TTC
[ENA]
¡û
>W131229244
AUGQ01000019
Actinomycetota
Microbacterium gubbeenense DSM 15944 [AUGQ]
29647
29720
+
Glu
TTC
[ENA]
¡û
>W131235264
AULK01000008
Actinomycetota
Gryllotalpicola ginsengisoli DSM 22003 [AULK]
3074
2999
-
Glu
TTC
[ENA]
¡û
>W1711505467
MKVN01000027
Actinomycetota
Micrococcales bacterium 73-13 [MKVN]
55196
55269
+
Glu
TTC
[ENA]
¡û
>W1711747227
MUKN01000071
Actinomycetota
Rathayibacter sp. VKM Ac-2630 [MUKN]
1087
1162
+
Glu
TTC
[ENA]
¡û
>C171036935
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
127551
127476
-
Glu
TTC
-
¡û
>WENV180110863
OAPN01010451
[OAPN] marine metagenome; 2011
530
603
+
Glu
TTC
[ENA]
¢þ
>WENV180114438
OAPS01009731
[OAPS] marine metagenome; sea water
566
639
+
Glu
TTC
[ENA]
¢þ
>WENV180397835
OBPZ01014076
[OBPZ] marine metagenome; ENVO:00002010
295
220
-
Glu
TTC
[ENA]
¢þ
>WENV180590793
OCOU01012049
[OCOU] marine metagenome; Water
548
475
-
Glu
TTC
[ENA]
¢þ
>WENV180650216
OCSY01000173
[OCSY] marine metagenome; 30 L Plastic container
1322
1397
+
Glu
TTC
[ENA]
¢þ
>WENV181163151
OEIO01114572
[OEIO] marine metagenome; sea ice
338
413
+
Glu
TTC
[ENA]
¢þ
>WENV181222708
OFDC01000115
[OFDC] hot springs metagenome; Water
26309
26382
+
Glu
TTC
[ENA]
¢þ
>WENV181323526
OFKY01003671
[OFKY] marine metagenome; sea ice
647
722
+
Glu
TTC
[ENA]
¢þ
>WENV181324121
OFLC01000152
[OFLC] marine metagenome; melt pond
1839
1764
-
Glu
TTC
[ENA]
¢þ
>WENV181324528
OFLF01000547
[OFLF] marine metagenome; melt pond
2193
2268
+
Glu
TTC
[ENA]
¢þ
>WENV181385799
OFRK01006559
[OFRK] marine metagenome; sea ice
444
369
-
Glu
TTC
[ENA]
¢þ
>WENV182542771
OJAZ01002066
[OJAZ] seawater metagenome; Sea water
4735
4662
-
Glu
TTC
[ENA]
¢þ
>WENV182544966
OJBL01001160
[OJBL] seawater metagenome; Sea water
198
271
+
Glu
TTC
[ENA]
¢þ
>WENV182545607
OJBN01008951
[OJBN] seawater metagenome; Sea water
1562
1489
-
Glu
TTC
[ENA]
¢þ
>WENV182548460
OJBW01000286
[OJBW] seawater metagenome; Sea water
265
192
-
Glu
TTC
[ENA]
¢þ
>WENV182549983
OJBZ01001165
[OJBZ] seawater metagenome; Sea water
8911
8838
-
Glu
TTC
[ENA]
¢þ
>WENV182552638
OJCN01000197
[OJCN] seawater metagenome; Sea water
1534
1607
+
Glu
TTC
[ENA]
¢þ
>WENV182553195
OJCR01000386
[OJCR] seawater metagenome; Sea water
6646
6719
+
Glu
TTC
[ENA]
¢þ
>WENV182554125
OJCT01002385
[OJCT] seawater metagenome; Sea water
1326
1253
-
Glu
TTC
[ENA]
¢þ
>WENV182556600
OJDG01023936
[OJDG] seawater metagenome; Sea water
520
593
+
Glu
TTC
[ENA]
¢þ
>WENV182557009
OJDI01000283
[OJDI] seawater metagenome; Sea water
2656
2729
+
Glu
TTC
[ENA]
¢þ
>WENV182561585
OJDX01000014
[OJDX] seawater metagenome; Sea water
24013
23940
-
Glu
TTC
[ENA]
¢þ
>WENV182561921
OJDY01000013
[OJDY] seawater metagenome; Sea water
24311
24384
+
Glu
TTC
[ENA]
¢þ
>WENV182562596
OJDZ01016903
[OJDZ] seawater metagenome; Sea water
546
473
-
Glu
TTC
[ENA]
¢þ
>WENV182562666
OJEA01000026
[OJEA] seawater metagenome; Sea water
14600
14527
-
Glu
TTC
[ENA]
¢þ
>WENV182563044
OJEB01000013
[OJEB] seawater metagenome; Sea water
20381
20454
+
Glu
TTC
[ENA]
¢þ
>WENV182564056
OJEE01000024
[OJEE] seawater metagenome; Sea water
21858
21931
+
Glu
TTC
[ENA]
¢þ
>WENV182569019
OJEY01000029
[OJEY] seawater metagenome; Sea water
20629
20702
+
Glu
TTC
[ENA]
¢þ
>WENV182569686
OJFB01000017
[OJFB] seawater metagenome; Sea water
24297
24224
-
Glu
TTC
[ENA]
¢þ
>WENV182571120
OJFG01000495
[OJFG] seawater metagenome; Sea water
7846
7773
-
Glu
TTC
[ENA]
¢þ
>WENV182572557
OJFL01023560
[OJFL] seawater metagenome; Sea water
789
716
-
Glu
TTC
[ENA]
¢þ
>WENV182575790
OJFW01001736
[OJFW] seawater metagenome; Sea water
402
475
+
Glu
TTC
[ENA]
¢þ
>WENV182576593
OJFY01000354
[OJFY] seawater metagenome; Sea water
476
549
+
Glu
TTC
[ENA]
¢þ
>WENV182580744
OJGW01010548
[OJGW] seawater metagenome; Sea water
71
144
+
Glu
TTC
[ENA]
¢þ
>WENV182582092
OJHA01000010
[OJHA] seawater metagenome; Sea water
21725
21798
+
Glu
TTC
[ENA]
¢þ
>WENV182582395
OJHB01000028
[OJHB] seawater metagenome; Sea water
20485
20558
+
Glu
TTC
[ENA]
¢þ
>WENV182586842
OJHK01007113
[OJHK] seawater metagenome; Sea water
117
44
-
Glu
TTC
[ENA]
¢þ
>WENV182587547
OJHN01000026
[OJHN] seawater metagenome; Sea water
5363
5290
-
Glu
TTC
[ENA]
¢þ
>WENV182588426
OJHT01001595
[OJHT] seawater metagenome; Sea water
888
961
+
Glu
TTC
[ENA]
¢þ
>WENV182592337
OJIR01000037
[OJIR] seawater metagenome; Sea water
20705
20778
+
Glu
TTC
[ENA]
¢þ
>WENV183054525
OLGU01000028
[OLGU] seawater metagenome; Sea water
24206
24133
-
Glu
TTC
[ENA]
¢þ
>WENV183059213
OLHU01000014
[OLHU] seawater metagenome; Sea water
24302
24229
-
Glu
TTC
[ENA]
¢þ
>WENV183060169
OLHX01000007
[OLHX] seawater metagenome; Sea water
24215
24142
-
Glu
TTC
[ENA]
¢þ
>WENV183615289
OOEB01001124
[OOEB] marine metagenome; sea ice
1225
1300
+
Glu
TTC
[ENA]
¢þ
>WENV183617312
OOEE01167746
[OOEE] marine metagenome; sea ice
182
257
+
Glu
TTC
[ENA]
¢þ
>WENV183620136
OOFR01009032
[OOFR] marine metagenome; seawater
503
578
+
Glu
TTC
[ENA]
¢þ
>WENV183620923
OOFT01000035
[OOFT] marine metagenome; sea ice
5151
5076
-
Glu
TTC
[ENA]
¢þ
>WENV183623274
OOFX01049079
[OOFX] marine metagenome; sea ice
332
257
-
Glu
TTC
[ENA]
¢þ
>WENV183625404
OOGF01024332
[OOGF] marine metagenome; seawater
347
420
+
Glu
TTC
[ENA]
¢þ
>WENV183625682
OOGG01008484
[OOGG] marine metagenome; sea ice
641
716
+
Glu
TTC
[ENA]
¢þ
>WENV183629534
OOGP01062504
[OOGP] marine metagenome; seawater
41
116
+
Glu
TTC
[ENA]
¢þ
>WENV183728852
PJTQ01000713
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
10852
10779
-
Glu
TTC
[ENA]
¢þ
>WENV170568478
FLMP01043641
[FLMP] seawater metagenome; seawater
618
693
+
Glu
TTC
[ENA]
¢þ
>WENV170601532
FUWD010178494
[FUWD] metagenome; unknown
256
331
+
Glu
TTC
[ENA]
¢þ
>WENV170601537
FUWD010178679
[FUWD] metagenome; unknown
613
688
+
Glu
TTC
[ENA]
¢þ
>WENV170602759
FUWD010262488
[FUWD] metagenome; unknown
145
220
+
Glu
TTC
[ENA]
¢þ
>WENV170620150
FUWD013026576
[FUWD] metagenome; unknown
520
445
-
Glu
TTC
[ENA]
¢þ
>WENV170624217
FUWD013177882
[FUWD] metagenome; unknown
269
344
+
Glu
TTC
[ENA]
¢þ
>WENV170626654
FUWD013228036
[FUWD] metagenome; unknown
999
924
-
Glu
TTC
[ENA]
¢þ
>WENV170627251
FUWD013232409
[FUWD] metagenome; unknown
61365
61290
-
Glu
TTC
[ENA]
¢þ
>WENV170627284
FUWD013232482
[FUWD] metagenome; unknown
37625
37700
+
Glu
TTC
[ENA]
¢þ
>WENV170627313
FUWD013232601
[FUWD] metagenome; unknown
21217
21292
+
Glu
TTC
[ENA]
¢þ
>WENV170628286
FUWD013244410
[FUWD] metagenome; unknown
520
445
-
Glu
TTC
[ENA]
¢þ
>WENV170632499
FUWD013383532
[FUWD] metagenome; unknown
269
344
+
Glu
TTC
[ENA]
¢þ
>WENV170949551
MEHZ011430703
[MEHZ] marine metagenome; marine surface water
361
436
+
Glu
TTC
[ENA]
¢þ
>WENV170952895
MEHZ011619623
[MEHZ] marine metagenome; marine surface water
14553
14480
-
Glu
TTC
[ENA]
¢þ
>C181143933
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
2538210
2538283
+
Glu
TTC
-
¡û
>C191074916
CP031423
Actinomycetota
Microbacterium lemovicicum Viu22 [CP031423]
243196
243123
-
Glu
TTC
-
¡û
>C191092337
CP032624
Actinomycetota
Gryllotalpicola protaetiae 2DFW10M-5 [CP032624]
1223224
1223297
+
Glu
TTC
-
¡û
>WENV002282
AACY020064228
Marine microbial communities from Global Ocean Sampling (GOS)
523
598
+
Glu
TTC
[ENA]
>W1910857508
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
3367343
3367416
+
Glu
TTC
[ENA]
¡û
>W1910857568
NBXA01000028
Actinomycetota
Subtercola boreus P27444 [NBXA]
1720
1795
+
Glu
TTC
[ENA]
¡û
>W1910857611
NBXB01000041
Actinomycetota
Subtercola boreus P27479 [NBXB]
54597
54670
+
Glu
TTC
[ENA]
¡û
>W1910857656
NBXC01000030
Actinomycetota
Subtercola boreus P27924 [NBXC]
85351
85424
+
Glu
TTC
[ENA]
¡û
>W1910857699
NBXD01000029
Actinomycetota
Subtercola boreus P27979 [NBXD]
85351
85424
+
Glu
TTC
[ENA]
¡û
>W1910857742
NBXE01000034
Actinomycetota
Subtercola boreus P28004 [NBXE]
73048
73121
+
Glu
TTC
[ENA]
¡û
>W1810280790
PSWU01000014
Actinomycetota
Rathayibacter toxicus FH99 [PSWU]
44587
44660
+
Glu
TTC
[ENA]
¡û
>W1810280828
PSWV01000010
Actinomycetota
Rathayibacter toxicus FH89 [PSWV]
733104
733177
+
Glu
TTC
[ENA]
¡û
>W1810280871
PSWW01000010
Actinomycetota
Rathayibacter toxicus FH86 [PSWW]
733107
733180
+
Glu
TTC
[ENA]
¡û
>W1810280915
PSWX01000012
Actinomycetota
Rathayibacter toxicus FH85 [PSWX]
385666
385739
+
Glu
TTC
[ENA]
¡û
>W1810281000
PSWZ01000009
Actinomycetota
Rathayibacter toxicus FH81 [PSWZ]
733108
733181
+
Glu
TTC
[ENA]
¡û
>W1810281048
PSXA01000016
Actinomycetota
Rathayibacter toxicus FH78 [PSXA]
44553
44626
+
Glu
TTC
[ENA]
¡û
>W1810281087
PSXB01000014
Actinomycetota
Rathayibacter toxicus FH183 [PSXB]
385577
385650
+
Glu
TTC
[ENA]
¡û
>W1810281141
PSXC01000011
Actinomycetota
Rathayibacter toxicus FH149 [PSXC]
733104
733177
+
Glu
TTC
[ENA]
¡û
>W1810281185
PSXD01000012
Actinomycetota
Rathayibacter toxicus FH147 [PSXD]
385552
385625
+
Glu
TTC
[ENA]
¡û
>W1810281228
PSXE01000011
Actinomycetota
Rathayibacter toxicus FH146 [PSXE]
438557
438630
+
Glu
TTC
[ENA]
¡û
>W1810281270
PSXF01000010
Actinomycetota
Rathayibacter toxicus FH145 [PSXF]
650470
650543
+
Glu
TTC
[ENA]
¡û
>W1810281313
PSXG01000009
Actinomycetota
Rathayibacter toxicus FH142 [PSXG]
733112
733185
+
Glu
TTC
[ENA]
¡û
>W1810281361
PSXH01000013
Actinomycetota
Rathayibacter toxicus FH141 [PSXH]
44461
44534
+
Glu
TTC
[ENA]
¡û
>W1810281399
PSXI01000009
Actinomycetota
Rathayibacter toxicus FH140 [PSXI]
733107
733180
+
Glu
TTC
[ENA]
¡û
>W1810281443
PSXJ01000010
Actinomycetota
Rathayibacter toxicus FH139 [PSXJ]
733113
733186
+
Glu
TTC
[ENA]
¡û
>W1810281486
PSXK01000010
Actinomycetota
Rathayibacter toxicus FH138 [PSXK]
733293
733366
+
Glu
TTC
[ENA]
¡û
>W1810281530
PSXL01000013
Actinomycetota
Rathayibacter toxicus FH137 [PSXL]
382939
383012
+
Glu
TTC
[ENA]
¡û
>W1810281572
PSXM01000010
Actinomycetota
Rathayibacter toxicus FH128 [PSXM]
730829
730902
+
Glu
TTC
[ENA]
¡û
>W1810281616
PSXN01000014
Actinomycetota
Rathayibacter toxicus FH100 [PSXN]
386859
386932
+
Glu
TTC
[ENA]
¡û
>W1810452307
PZPL01000001
Actinomycetota
Rathayibacter caricis DSM 15933 [PZPL]
457262
457335
+
Glu
TTC
[ENA]
¡û
>W1810503464
QBKD01000001
Actinomycetota
Microbacteriaceae bacterium MWH-Ta3 [QBKD]
839433
839360
-
Glu
TTC
[ENA]
¡û
>W1810569043
QEFB01000002
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
49018
48945
-
Glu
TTC
[ENA]
¡û
>W1810743476
QORO01000005
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
9462
9389
-
Glu
TTC
[ENA]
¡û
>C151025300
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
156901
156826
-
Glu
TTC
[Ensembl]
¡û
>SRA1023823
SRR035084.184670
454 Sequencing (SRP001805)
293
218
-
Glu
TTC
[SRA]
>C151073250
CP010848
Actinomycetota
Rathayibacter toxicus 70137 [CP010848]
2299524
2299597
+
Glu
TTC
[Ensembl]
¡û
>SRA1051806
SRR035098.80000
454 Sequencing (SRP001819)
430
355
-
Glu
TTC
[SRA]
>SRA1051900
SRR035098.99162
454 Sequencing (SRP001819)
295
220
-
Glu
TTC
[SRA]
>SRA1052440
SRR035098.204588
454 Sequencing (SRP001819)
221
146
-
Glu
TTC
[SRA]
>SRA1052478
SRR035098.211332
454 Sequencing (SRP001819)
161
86
-
Glu
TTC
[SRA]
>SRA1052848
SRR035098.284871
454 Sequencing (SRP001819)
97
22
-
Glu
TTC
[SRA]
>SRA1053069
SRR035098.330210
454 Sequencing (SRP001819)
151
226
+
Glu
TTC
[SRA]
>SRA1053250
SRR035098.368768
454 Sequencing (SRP001819)
227
152
-
Glu
TTC
[SRA]
>SRA1053550
SRR035098.434579
454 Sequencing (SRP001819)
221
146
-
Glu
TTC
[SRA]
>W1510064013
CDAR01000014
Actinomycetota
Microbacterium gorillae G3 [CDAR]
1069892
1069819
-
Glu
TTC
[ENA]
¡û
>WENV040274
AACY022073219
Marine microbial communities from Global Ocean Sampling (GOS)
54
129
+
Glu
TTC
[ENA]
>C161055011
CP013292
Actinomycetota
Rathayibacter toxicus WAC3373 [CP013292]
1454728
1454655
-
Glu
TTC
-
¡û
>WENV058912
AACY023346749
Marine microbial communities from Global Ocean Sampling (GOS)
818
743
-
Glu
TTC
[ENA]
>W1610597638
LFFC01000003
Actinomycetota
Actinobacteria bacterium casp-actino3 [LFFC]
1619
1694
+
Glu
TTC
[ENA]
¡û
>W1610625743
LIBA01000291
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
173
98
-
Glu
TTC
[ENA]
¡û
>W1610727925
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
2382725
2382798
+
Glu
TTC
[ENA]
¡û
>W1610736876
LMNR01000002
Actinomycetota
Rathayibacter sp. Leaf296 [LMNR]
1016215
1016290
+
Glu
TTC
[ENA]
¡û
>W1610736956
LMNT01000002
Actinomycetota
Rathayibacter sp. Leaf299 [LMNT]
274984
274909
-
Glu
TTC
[ENA]
¡û
>W1710570920
FOVM01000004
Actinomycetota
Mycetocola miduiensis [FOVM]
272572
272499
-
Glu
TTC
[ENA]
¡û
>W1710575695
FOZJ01000001
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
503175
503102
-
Glu
TTC
[ENA]
¡û
>W1710718885
LFFC01000003
Actinomycetota
Actinobacteria bacterium casp-actino3 [LFFC]
1619
1694
+
Glu
TTC
[ENA]
¡û
>W1710756870
LIBA01000291
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
173
98
-
Glu
TTC
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
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Direction
AA
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Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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