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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.340939 (50 seq.)
>W131157121
AQQO01000357
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
61753
61827
+
Gln
TTG
[ENA]
¡û
>W131157123
AQQO01000357
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
61975
62049
+
Gln
TTG
[ENA]
¡û
>W131157124
AQQO01000357
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
62075
62149
+
Gln
TTG
[ENA]
¡û
>W131157126
AQQO01000357
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
62305
62379
+
Gln
TTG
[ENA]
¡û
>W131157127
AQQO01000357
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
62402
62476
+
Gln
TTG
[ENA]
¡û
>W1711751084
MUNJ01000018
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
15178
15252
+
Gln
TTG
[ENA]
¡û
>W1711751086
MUNJ01000018
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
15399
15473
+
Gln
TTG
[ENA]
¡û
>W1711751088
MUNJ01000018
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
15629
15703
+
Gln
TTG
[ENA]
¡û
>W1711751089
MUNJ01000018
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
15726
15800
+
Gln
TTG
[ENA]
¡û
>W1711903691
MZNF01000018
Gammaproteobacteria
Gilliamella apicola [MZNF]
49779
49853
+
Gln
TTG
[ENA]
¡û
>W1711903692
MZNF01000018
Gammaproteobacteria
Gilliamella apicola [MZNF]
50040
50114
+
Gln
TTG
[ENA]
¡û
>W1711932501
NAHU01000084
Gammaproteobacteria
Gilliamella apicola [NAHU]
3323
3249
-
Gln
TTG
[ENA]
¡û
>W1711932502
NAHU01000084
Gammaproteobacteria
Gilliamella apicola [NAHU]
3062
2988
-
Gln
TTG
[ENA]
¡û
>W1711932588
NAHW01000015
Gammaproteobacteria
Gilliamella apicola [NAHW]
53882
53956
+
Gln
TTG
[ENA]
¡û
>W1711932589
NAHW01000015
Gammaproteobacteria
Gilliamella apicola [NAHW]
54143
54217
+
Gln
TTG
[ENA]
¡û
>W1711938986
NARN01000002
Gammaproteobacteria
Gilliamella apicola [NARN]
94362
94288
-
Gln
TTG
[ENA]
¡û
>W1711938987
NARN01000002
Gammaproteobacteria
Gilliamella apicola [NARN]
94102
94028
-
Gln
TTG
[ENA]
¡û
>W1711939258
NARS01000214
Gammaproteobacteria
Gilliamella apicola [NARS]
1025
951
-
Gln
TTG
[ENA]
¡û
>W1711939259
NARS01000214
Gammaproteobacteria
Gilliamella apicola [NARS]
764
690
-
Gln
TTG
[ENA]
¡û
>W1711939349
NARU01000223
Gammaproteobacteria
Gilliamella apicola [NARU]
1254
1180
-
Gln
TTG
[ENA]
¡û
>W1711939350
NARU01000223
Gammaproteobacteria
Gilliamella apicola [NARU]
993
919
-
Gln
TTG
[ENA]
¡û
>W1711939412
NARW01000003
Gammaproteobacteria
Gilliamella apicola [NARW]
140876
140950
+
Gln
TTG
[ENA]
¡û
>W1711939413
NARW01000003
Gammaproteobacteria
Gilliamella apicola [NARW]
141136
141210
+
Gln
TTG
[ENA]
¡û
>W1711939487
NARX01000195
Gammaproteobacteria
Gilliamella apicola [NARX]
863
789
-
Gln
TTG
[ENA]
¡û
>W1711939488
NARX01000195
Gammaproteobacteria
Gilliamella apicola [NARX]
603
529
-
Gln
TTG
[ENA]
¡û
>W1711939747
NASD01000010
Gammaproteobacteria
Gilliamella apis NO3 [NASD]
60830
60756
-
Gln
TTG
[ENA]
¡û
>W1711940188
NASN01000005
Gammaproteobacteria
Gilliamella sp. A7 [NASN]
31880
31806
-
Gln
TTG
[ENA]
¡û
>WENV183780868
PPYF01188073
[PPYF] human gut metagenome; stool from patient with Crohn's disease
200
126
-
Gln
TTG
[ENA]
¢þ
>WENV183780878
PPYF01188087
[PPYF] human gut metagenome; stool from patient with Crohn's disease
86975
86901
-
Gln
TTG
[ENA]
¢þ
>C181160565
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3382049
3381975
-
Gln
TTG
-
¡û
>C181160567
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3381827
3381753
-
Gln
TTG
-
¡û
>C181160568
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3381727
3381653
-
Gln
TTG
-
¡û
>C181160570
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3381497
3381423
-
Gln
TTG
-
¡û
>C181160571
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3381400
3381326
-
Gln
TTG
-
¡û
>W1810423066
PYSI01000002
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
136820
136894
+
Gln
TTG
[ENA]
¡û
>W1810603784
QGLO01000004
Gammaproteobacteria
Gilliamella apis ESL0172 [QGLO]
384476
384550
+
Gln
TTG
[ENA]
¡û
>W1511347950
JRKB01000009
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
94
168
+
Gln
TTG
[ENA]
¡û
>W1511347994
JRKB01000115
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
75
1
-
Gln
TTG
[ENA]
¡û
>W1511348001
JRKB01000135
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
97
171
+
Gln
TTG
[ENA]
¡û
>W1511348002
JRKB01000135
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
197
271
+
Gln
TTG
[ENA]
¡û
>W1511478870
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
87486
87412
-
Gln
TTG
[ENA]
¡û
>W1511478872
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
87264
87190
-
Gln
TTG
[ENA]
¡û
>W1511478873
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
87164
87090
-
Gln
TTG
[ENA]
¡û
>W1511478875
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
86934
86860
-
Gln
TTG
[ENA]
¡û
>W1511478876
JWHQ01000013
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
86837
86763
-
Gln
TTG
[ENA]
¡û
>C161109347
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2451731
2451805
+
Gln
TTG
[Ensembl]
¡û
>C161109349
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2451953
2452027
+
Gln
TTG
[Ensembl]
¡û
>C161109350
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2452053
2452127
+
Gln
TTG
[Ensembl]
¡û
>C161109352
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2452283
2452357
+
Gln
TTG
[Ensembl]
¡û
>C161109353
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2452380
2452454
+
Gln
TTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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