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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341095 (12 seq.)
>A171003659
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
1429080
1429151
+
Cys
GCA
-
¡û
>A171003834
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
1366943
1366871
-
Cys
GCA
-
¡û
>A171005701
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
202456
202384
-
Cys
GCA
-
¡û
>A171006123
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
1412406
1412333
-
Cys
GCA
-
¡û
>At0638
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
1317544
1317473
-
Cys
GCA
[Ensembl]
¡û
>WENV170675790
LDZQ01000577
[LDZQ] terrestrial metagenome; oil reservoir sample I2
18860
18932
+
Cys
GCA
[ENA]
¢þ
>WENV170676378
LDZR01002364
[LDZR] terrestrial metagenome; oil reservoir sample K2
23142
23070
-
Cys
GCA
[ENA]
¢þ
>WENV170779128
LZCG01001463
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
1467
1395
-
Cys
GCA
[ENA]
¢þ
>WENV170779219
LZQN01000020
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
7596
7668
+
Cys
GCA
[ENA]
¢þ
>W1910200370
FJNF01000151
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
125
53
-
Cys
GCA
[ENA]
¡û
>W1610612317
LGEQ01000004
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
18860
18932
+
Cys
GCA
[ENA]
¡û
>W1610612596
LGEX01000006
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
23142
23070
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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