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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341101 (14 seq.)
>A171001211
CP001899
Euryarchaeota
Ferroglobus placidus DSM 10642 [CP001899]
969268
969340
+
His
GTG
-
¡û
>A171002125
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
647043
646971
-
His
GTG
-
¡û
>A171003813
CP006577
Euryarchaeota
Archaeoglobus fulgidus DSM 8774 [CP006577]
761323
761395
+
His
GTG
-
¡û
>A171005685
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
1147601
1147529
-
His
GTG
-
¡û
>A171006136
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
903325
903253
-
His
GTG
-
¡û
>At0612
AE000782
Euryarchaeota
Archaeoglobus fulgidus DSM 4304 [AE000782]
714318
714389
+
His
GTG
[Ensembl]
¡û
>WENV170675807
LDZQ01000586
[LDZQ] terrestrial metagenome; oil reservoir sample I2
29484
29556
+
His
GTG
[ENA]
¢þ
>WENV170676381
LDZR01002367
[LDZR] terrestrial metagenome; oil reservoir sample K2
22981
23053
+
His
GTG
[ENA]
¢þ
>WENV170779019
LZCG01000058
[LZCG] oil field metagenome; sample BH-FW-1 from oil reservoir
3136
3064
-
His
GTG
[ENA]
¢þ
>WENV170779244
LZQN01000042
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
3385
3313
-
His
GTG
[ENA]
¢þ
>W1910200358
FJNF01000113
Euryarchaeota
Archaeoglobus fulgidus [FJNF]
25485
25557
+
His
GTG
[ENA]
¡û
>W1610001575
ACYZ01000001
Euryarchaeota
Ferroglobus placidus DSM 10642 [ACYZ]
32371
32445
+
His
GTG
[ENA]
¡û
>W1610612334
LGEQ01000013
Euryarchaeota
Archaeoglobus fulgidus [LGEQ]
29484
29556
+
His
GTG
[ENA]
¡û
>W1610612599
LGEX01000009
Euryarchaeota
Archaeoglobus fulgidus [LGEX]
22981
23053
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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