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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341704 (46 seq.)
>W1711190036
LWRO01000006
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
5591
5520
-
Gly
GCC
[ENA]
¡û
>W1711711435
MTAX01000071
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
102094
102023
-
Gly
GCC
[ENA]
¡û
>C171064216
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
6981285
6981214
-
Gly
GCC
-
¡û
>W131036340
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
104553
104482
-
Gly
GCC
[ENA]
¡û
>W141004310
AFXD01000057
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
36124
36195
+
Gly
GCC
[ENA]
¡û
>WENV180085245
MPMD02300121
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
15649
15720
+
Gly
GCC
[ENA]
¢þ
>WENV180087067
MPME02047002
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
1351
1422
+
Gly
GCC
[ENA]
¢þ
>WENV180093021
MPMF02295839
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
1076
1005
-
Gly
GCC
[ENA]
¢þ
>W141021254
AJLJ01000126
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
4248
4177
-
Gly
GCC
[ENA]
¡û
>W141021356
AJLL01000047
Cyanobacteriota
Fischerella thermalis PCC 7521 [AJLL]
12710
12781
+
Gly
GCC
[ENA]
¡û
>W141038345
ALVO01000011
Cyanobacteriota
Geminocystis herdmanii PCC 6308 [ALVO]
445007
444936
-
Gly
GCC
[ENA]
¡û
>W141038347
ALVT01000001
Cyanobacteriota
Fischerella sp. PCC 9605 [ALVT]
123595
123666
+
Gly
GCC
[ENA]
¡û
>W08011509
ABVI01000011
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
25377
25303
-
Gly
GCC
[ENA]
¡û
>W141231476
BAUB01000006
Cyanobacteriota
Picosynechococcus sp. NKBG15041c NKBG15041c [BAUB]
15273
15346
+
Gly
GCC
[ENA]
¡û
>WENV170290543
CESA01025990
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
56289
56218
-
Gly
GCC
[ENA]
¢þ
>WENV170336248
CESZ01205604
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1092
1163
+
Gly
GCC
[ENA]
¢þ
>WENV170828414
MDSY01149627
[MDSY] marine metagenome; seawater
3985
3914
-
Gly
GCC
[ENA]
¢þ
>WENV170938963
MDTG01317723
[MDTG] marine metagenome; seawater
7453
7382
-
Gly
GCC
[ENA]
¢þ
>CHL1810014659
KM462865
Viridiplantae
Edaphochlorella mirabilis (KM462865)
156960
157031
+
Gly
GCC
[ENA]
¡û
>CHL1810014686
KM462866
Viridiplantae
Pseudochlorella signiensis (KM462866)
182443
182514
+
Gly
GCC
[ENA]
¡û
>CHL1810014755
KM462868
Viridiplantae
Koliella longiseta (KM462868)
183793
183722
-
Gly
GCC
[ENA]
¡û
>CHL1810014873
KM462873
Viridiplantae
Neocystis brevis (KM462873)
208718
208647
-
Gly
GCC
[ENA]
¡û
>C181004752
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
3352365
3352436
+
Gly
GCC
-
¡û
>C181004866
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
918692
918621
-
Gly
GCC
-
¡û
>C181169663
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
3351264
3351335
+
Gly
GCC
-
¡û
>W09113160
ABYK01000016
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
21196
21267
+
Gly
GCC
[ENA]
¡û
>W1910596305
LAGY01000060
Cyanobacteriota
Nostoc linckia z2 [LAGY]
25614
25685
+
Gly
GCC
[ENA]
¡û
>W1910909800
NGZU01000026
Cyanobacteriota
Fischerella thermalis WC114 [NGZU]
82877
82806
-
Gly
GCC
[ENA]
¡û
>W1910909833
NGZV01000025
Cyanobacteriota
Fischerella thermalis WC157 [NGZV]
82904
82833
-
Gly
GCC
[ENA]
¡û
>W1910910200
NHAE01000098
Cyanobacteriota
Fischerella thermalis WC439 [NHAE]
46066
46137
+
Gly
GCC
[ENA]
¡û
>W1911070802
NMQD01000769
Cyanobacteriota
Fischerella thermalis CCMEE 5319 [NMQD]
853
782
-
Gly
GCC
[ENA]
¡û
>W1911178216
NQMD01000008
Cyanobacteriota
Fischerella thermalis CCMEE 5196 [NQMD]
383
454
+
Gly
GCC
[ENA]
¡û
>CHL090102243
DQ422812
Viridiplantae
Chlorokybus atmophyticus
79120
79191
+
Gly
GCC
[ENA]
¡û
>W1810398615
PYER01000006
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
21006
21077
+
Gly
GCC
[ENA]
¡û
>C151009151
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
954752
954823
+
Gly
GCC
[Ensembl]
¡û
>W1511324039
JQFA01000005
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
186804
186733
-
Gly
GCC
[ENA]
¡û
>W1511400831
JTHE01000274
Cyanobacteriota
Lyngbya confervoides BDU141951 [JTHE]
2149256
2149327
+
Gly
GCC
[ENA]
¡û
>W1511401852
JTJD01000271
Cyanobacteriota
Aphanocapsa montana BDHKU210001 [JTJD]
2152970
2153041
+
Gly
GCC
[ENA]
¡û
>C161001522
AP014815
Cyanobacteriota
Geminocystis sp. NIES-3708 [AP014815]
1774570
1774499
-
Gly
GCC
[Ensembl]
¡û
>W121005266
AFSJ01000263
Unclassified
sea squirt metagenome P2-Fiji [AFSJ]
2851
2780
-
Gly
GCC
[ENA]
¡û
>W121009961
AGGA01000022
Unclassified
sea squirt metagenome P4-Papua_New_Guinea [AGGA]
6387
6458
+
Gly
GCC
[ENA]
¡û
>W121016785
AGRF01000001
Unclassified
sea squirt metagenome P1-Palau [AGRF]
162498
162427
-
Gly
GCC
[ENA]
¡û
>C131004912
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
3135137
3135208
+
Gly
GCC
[Ensembl]
¡û
>C131004963
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
45475
45546
+
Gly
GCC
[Ensembl]
¡û
>W1610932126
LUHI01000046
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
85351
85280
-
Gly
GCC
[ENA]
¡û
>W1610992155
LWRO01000006
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
5591
5520
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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