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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341770 (79 seq.)
>W1711027059
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76148
76074
-
Gln
TTG
[ENA]
¡û
>W1711027060
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76050
75976
-
Gln
TTG
[ENA]
¡û
>W1711027063
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75666
75592
-
Gln
TTG
[ENA]
¡û
>W1711174323
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59666
59740
+
Gln
TTG
[ENA]
¡û
>W1711621610
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
719766
719840
+
Gln
TTG
[ENA]
¡û
>C020672
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818182
3818108
-
Gln
TTG
[Ensembl]
¡û
>C020673
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818083
3818009
-
Gln
TTG
[Ensembl]
¡û
>C020676
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3817731
3817657
-
Gln
TTG
[Ensembl]
¡û
>C021947
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843536
843610
+
Gln
TTG
[Ensembl]
¡û
>C021948
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843634
843708
+
Gln
TTG
[Ensembl]
¡û
>C021951
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
844017
844091
+
Gln
TTG
[Ensembl]
¡û
>w026318
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17884
17960
+
Gln
TTG
[ENA]
¡û
>w026315
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17532
17608
+
Gln
TTG
[ENA]
¡û
>w026314
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17433
17509
+
Gln
TTG
[ENA]
¡û
>w024928
AAZC01000072
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
1011
1087
+
Gln
TTG
[ENA]
¡û
>w018661
AATK01000076
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
12960
12884
-
Gln
TTG
[ENA]
¡û
>C08008661
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3930489
3930418
-
Gln
TTG
[Ensembl]
¡û
>C08008761
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053872
4053801
-
Gln
TTG
[Ensembl]
¡û
>C08008762
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053773
4053702
-
Gln
TTG
[Ensembl]
¡û
>C08008765
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053421
4053350
-
Gln
TTG
[Ensembl]
¡û
>ENV08001631
ABNJ01142409
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
92
18
-
Gln
TTG
[ENA]
¡û
>WENV183799130
PVBE010478401
[PVBE] marine metagenome; water
577
651
+
Gln
TTG
[ENA]
¢þ
>C181075006
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3108984
3109058
+
Gln
TTG
-
¡û
>C181075007
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3109083
3109157
+
Gln
TTG
-
¡û
>C181075010
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3109437
3109511
+
Gln
TTG
-
¡û
>C181164491
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033272
3033346
+
Gln
TTG
-
¡û
>C181164492
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033371
3033445
+
Gln
TTG
-
¡û
>C181164495
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033723
3033797
+
Gln
TTG
-
¡û
>C181167923
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648686
3648612
-
Gln
TTG
-
¡û
>C181167924
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648587
3648513
-
Gln
TTG
-
¡û
>C181167927
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648233
3648159
-
Gln
TTG
-
¡û
>C191117230
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090982
4090908
-
Gln
TTG
-
¡û
>C191117231
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090884
4090810
-
Gln
TTG
-
¡û
>C191117234
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090482
4090408
-
Gln
TTG
-
¡û
>C191173244
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224622
1224548
-
Gln
TTG
-
¡û
>C191173245
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224524
1224450
-
Gln
TTG
-
¡û
>C191185833
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907421
907495
+
Gln
TTG
-
¡û
>C191185834
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907519
907593
+
Gln
TTG
-
¡û
>C191206470
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3752097
3752023
-
Gln
TTG
-
¡û
>C191213302
LR134510
Gammaproteobacteria
Actinobacillus delphinicola NCTC12871 [LR134510]
1589238
1589164
-
Gln
TTG
-
¡û
>C191213303
LR134510
Gammaproteobacteria
Actinobacillus delphinicola NCTC12871 [LR134510]
1589134
1589060
-
Gln
TTG
-
¡û
>C191213306
LR134510
Gammaproteobacteria
Actinobacillus delphinicola NCTC12871 [LR134510]
1588852
1588778
-
Gln
TTG
-
¡û
>W09102914
AAIO01000137
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
454
528
+
Gln
TTG
[ENA]
¡û
>W09103093
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
210135
210061
-
Gln
TTG
[ENA]
¡û
>W09103094
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
210037
209963
-
Gln
TTG
[ENA]
¡û
>W09103097
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
209654
209580
-
Gln
TTG
[ENA]
¡û
>C09109147
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1307404
1307478
+
Gln
TTG
[Ensembl]
¡û
>W1810155310
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
476
402
-
Gln
TTG
[ENA]
¡û
>W1810155311
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
378
304
-
Gln
TTG
[ENA]
¡û
>W1810157818
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
27593
27667
+
Gln
TTG
[ENA]
¡û
>W1810157819
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
27691
27765
+
Gln
TTG
[ENA]
¡û
>W1810157822
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
28074
28148
+
Gln
TTG
[ENA]
¡û
>W1810157859
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4224929
4225003
+
Gln
TTG
[ENA]
¡û
>W1810157860
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4225027
4225101
+
Gln
TTG
[ENA]
¡û
>W1810423005
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2464803
2464729
-
Gln
TTG
[ENA]
¡û
>W1810721531
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48621
48695
+
Gln
TTG
[ENA]
¡û
>W1810721532
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48719
48793
+
Gln
TTG
[ENA]
¡û
>W1810721535
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
49072
49146
+
Gln
TTG
[ENA]
¡û
>W10119029
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303364
303290
-
Gln
TTG
[ENA]
¡û
>W10126050
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508403
508329
-
Gln
TTG
[ENA]
¡û
>W10126051
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508305
508231
-
Gln
TTG
[ENA]
¡û
>W10126054
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
507953
507879
-
Gln
TTG
[ENA]
¡û
>W10126358
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303785
303859
+
Gln
TTG
[ENA]
¡û
>C11119380
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1319864
1319938
+
Gln
TTG
[Ensembl]
¡û
>C11119518
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912614
3912540
-
Gln
TTG
[Ensembl]
¡û
>C11119519
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912515
3912441
-
Gln
TTG
[Ensembl]
¡û
>C11119522
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912163
3912089
-
Gln
TTG
[Ensembl]
¡û
>C11119620
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4001385
4001311
-
Gln
TTG
[Ensembl]
¡û
>W11125201
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303364
303290
-
Gln
TTG
[ENA]
¡û
>W11133311
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508403
508329
-
Gln
TTG
[ENA]
¡û
>W11133312
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508305
508231
-
Gln
TTG
[ENA]
¡û
>W11133315
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
507953
507879
-
Gln
TTG
[ENA]
¡û
>W11133619
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303785
303859
+
Gln
TTG
[ENA]
¡û
>W11178474
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
164372
164298
-
Gln
TTG
[ENA]
¡û
>W1610875171
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76148
76074
-
Gln
TTG
[ENA]
¡û
>W1610875172
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76050
75976
-
Gln
TTG
[ENA]
¡û
>W1610875175
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75666
75592
-
Gln
TTG
[ENA]
¡û
>W1610982636
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59666
59740
+
Gln
TTG
[ENA]
¡û
>W1710597908
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
148702
148776
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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