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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341771 (29 seq.)
>W1711285159
LZSB01001398
Gammaproteobacteria
Klebsiella pneumoniae [LZSB]
4213
4284
+
Undet
???
[ENA]
¡û
>W1711511130
MLCD01000266
Gammaproteobacteria
Klebsiella pneumoniae [MLCD]
1439
1513
+
Undet
???
[ENA]
¡û
>w025981
ABAM01000003
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23 [ABAM]
176458
176382
-
Phe
GAA
[ENA]
¡û
>WENV170002176
AGFT01139401
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
434
505
+
Phe
GAA
[ENA]
¢þ
>C181065656
CP022459
Gammaproteobacteria
Shigella sonnei 2015C-3807 [CP022459]
3054359
3054433
+
Phe
GAA
-
¡û
>C181141938
CP026823
Gammaproteobacteria
Shigella dysenteriae 96-3162 [CP026823]
2956626
2956700
+
Phe
GAA
-
¡û
>C193003386
LR134246
Gammaproteobacteria
Escherichia coli NCTC9702 [LR134246]
4691144
4691218
+
Phe
GAA
-
¡û
>C191020882
CP022609
Gammaproteobacteria
Escherichia coli ATCC 700415 [CP022609]
1025663
1025589
-
Phe
GAA
-
¡û
>C191220662
LR588410
Gammaproteobacteria
Klebsiella pneumoniae NCTC9171 [LR588410]
4726626
4726700
+
Phe
GAA
-
¡û
>W1930024787
NLPL01000002
Gammaproteobacteria
Escherichia coli MOD1-EC5441 [NLPL]
77
3
-
Phe
GAA
[ENA]
¡û
>W1930024932
NLPP01000032
Gammaproteobacteria
Escherichia coli MOD1-EC5436 [NLPP]
40163
40237
+
Phe
GAA
[ENA]
¡û
>W1911020739
NLOP01000002
Gammaproteobacteria
Escherichia coli MOD1-EC5472 [NLOP]
229295
229369
+
Phe
GAA
[ENA]
¡û
>W1911020746
NLOP01000012
Gammaproteobacteria
Escherichia coli MOD1-EC5472 [NLOP]
63768
63840
+
Phe
GAA
[ENA]
¡û
>W1911021572
NLPC01000018
Gammaproteobacteria
Escherichia coli MOD1-EC5454 [NLPC]
16185
16111
-
Phe
GAA
[ENA]
¡û
>W1911021857
NLPH01000037
Gammaproteobacteria
Escherichia coli MOD1-EC5446 [NLPH]
75
1
-
Phe
GAA
[ENA]
¡û
>W1911021886
NLPI01000009
Gammaproteobacteria
Escherichia coli MOD1-EC5445 [NLPI]
27060
26986
-
Phe
GAA
[ENA]
¡û
>W1911021900
NLPJ01000001
Gammaproteobacteria
Escherichia coli MOD1-EC5443 [NLPJ]
147580
147654
+
Phe
GAA
[ENA]
¡û
>W1911022035
NLPM01000004
Gammaproteobacteria
Escherichia coli MOD1-EC5440 [NLPM]
81461
81387
-
Phe
GAA
[ENA]
¡û
>W1911022221
NLPR01000007
Gammaproteobacteria
Escherichia coli MOD1-EC5431 [NLPR]
16771
16697
-
Phe
GAA
[ENA]
¡û
>W1911082741
NNAP01000006
Gammaproteobacteria
Escherichia coli WW2 [NNAP]
140909
140835
-
Phe
GAA
[ENA]
¡û
>W1911082742
NNAP01000008
Gammaproteobacteria
Escherichia coli WW2 [NNAP]
118675
118749
+
Phe
GAA
[ENA]
¡û
>W1911203950
NRHU01000048
Gammaproteobacteria
Klebsiella pneumoniae BA34595 [NRHU]
32253
32327
+
Phe
GAA
[ENA]
¡û
>W1911203962
NRHU01000103
Gammaproteobacteria
Klebsiella pneumoniae BA34595 [NRHU]
75
1
-
Phe
GAA
[ENA]
¡û
>W1911574051
PDEJ01000003
Gammaproteobacteria
Yersinia pseudotuberculosis FDAARGOS_416 [PDEJ]
25516
25442
-
Phe
GAA
[ENA]
¡û
>W1810048227
PCGJ01000013
Gammaproteobacteria
Escherichia coli KCJ3821 [PCGJ]
84
10
-
Phe
GAA
[ENA]
¡û
>W1810052307
PDCE01000024
Gammaproteobacteria
Escherichia coli M15-4 [PDCE]
38650
38576
-
Phe
GAA
[ENA]
¡û
>WENV11102248
AGFT01139401
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
434
505
+
Phe
GAA
[ENA]
¡û
>W1511394682
JTBE01000012
Gammaproteobacteria
Escherichia coli FDA_MicroDB_82 [JTBE]
1049772
1049846
+
Phe
GAA
[ENA]
¡û
>W1611042720
LZSB01001398
Gammaproteobacteria
Klebsiella pneumoniae [LZSB]
4213
4284
+
Undet
???
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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