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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341802 (106 seq.)
>W1711228156
LXWI01000050
Campylobacterota
Helicobacter pullorum [LXWI]
1602
1528
-
Cys
GCA
[ENA]
¡û
>W1711302773
MAJF01000018
Campylobacterota
Helicobacter pullorum [MAJF]
8894
8820
-
Cys
GCA
[ENA]
¡û
>W1711302823
MAJG01000098
Campylobacterota
Helicobacter pullorum [MAJG]
1600
1526
-
Cys
GCA
[ENA]
¡û
>W1711306353
MANJ01000078
Campylobacterota
Helicobacter pullorum [MANJ]
3287
3361
+
Cys
GCA
[ENA]
¡û
>W1711306359
MANK01000001
Campylobacterota
Helicobacter pullorum [MANK]
1615
1541
-
Cys
GCA
[ENA]
¡û
>W1711307558
MAOZ01000022
Campylobacterota
Helicobacter pullorum [MAOZ]
3221
3295
+
Cys
GCA
[ENA]
¡û
>W1711307598
MAPA01000067
Campylobacterota
Helicobacter pullorum [MAPA]
1505
1431
-
Cys
GCA
[ENA]
¡û
>W1711307615
MAPB01000013
Campylobacterota
Helicobacter pullorum [MAPB]
7028
6954
-
Cys
GCA
[ENA]
¡û
>W1711307671
MAPC01000057
Campylobacterota
Helicobacter pullorum [MAPC]
3318
3392
+
Cys
GCA
[ENA]
¡û
>W1711307707
MAPD01000069
Campylobacterota
Helicobacter pullorum [MAPD]
1497
1423
-
Cys
GCA
[ENA]
¡û
>W1711307744
MAPE01000068
Campylobacterota
Helicobacter pullorum [MAPE]
3259
3333
+
Cys
GCA
[ENA]
¡û
>C010579
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
362655
362581
-
Cys
GCA
[Ensembl]
¡û
>W08010301
ABQS01000088
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
9052
9126
+
Cys
GCA
[ENA]
¡û
>W08010313
ABQT01000004
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
18340
18269
-
Cys
GCA
[ENA]
¡û
>W08010347
ABQU01000004
Campylobacterota
Helicobacter pullorum MIT 98-5489 [ABQU]
23557
23486
-
Cys
GCA
[ENA]
¡û
>WENV181197044
OEQZ01013674
[OEQZ] metagenome; Caecal content
284
210
-
Cys
GCA
[ENA]
¢þ
>WENV181199270
OERG01010038
[OERG] metagenome; Caecal content
233
307
+
Cys
GCA
[ENA]
¢þ
>WENV181203559
OERW01001584
[OERW] metagenome; Caecal content
590
664
+
Cys
GCA
[ENA]
¢þ
>WENV181304302
OFHW01023439
[OFHW] metagenome; Caecal content
144
70
-
Cys
GCA
[ENA]
¢þ
>WENV183074061
OLIU01006681
[OLIU] human gut metagenome; stool sample
3153
3227
+
Cys
GCA
[ENA]
¢þ
>WENV170636943
JFBN01307248
[JFBN] chicken gut metagenome; ceca of Broiler chicken
43208
43134
-
Cys
GCA
[ENA]
¢þ
>C181054469
CP021886
Campylobacterota
Helicobacter apodemus SCJK1 [CP021886]
1973
2047
+
Cys
GCA
-
¡û
>C181213878
LS483446
Campylobacterota
Helicobacter mustelae NCTC12198 [LS483446]
1243596
1243522
-
Cys
GCA
-
¡û
>C191000213
AP017374
Campylobacterota
Helicobacter cinaedi MRY08-1234 [AP017374]
1626296
1626222
-
Cys
GCA
-
¡û
>C191002288
AP018446
Campylobacterota
Helicobacter cinaedi P03D0629 [AP018446]
1648233
1648159
-
Cys
GCA
-
¡û
>C191002324
AP018447
Campylobacterota
Helicobacter cinaedi P06D0798 [AP018447]
1609687
1609613
-
Cys
GCA
-
¡û
>C191003917
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
1595272
1595198
-
Cys
GCA
-
¡û
>C191213245
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1313270
1313344
+
Cys
GCA
-
¡û
>W09134353
ACSF01000003
Campylobacterota
Helicobacter canadensis MIT 98-5491(ACSF) [ACSF]
149755
149829
+
Cys
GCA
[ENA]
¡û
>W1910546130
FZMI01000024
Campylobacterota
Helicobacter cinaedi [FZMI]
55852
55778
-
Cys
GCA
[ENA]
¡û
>W1910546582
FZMV01000003
Campylobacterota
Helicobacter pullorum [FZMV]
6422
6496
+
Cys
GCA
[ENA]
¡û
>W1910546686
FZMX01000025
Campylobacterota
Helicobacter pullorum [FZMX]
42031
41957
-
Cys
GCA
[ENA]
¡û
>W1910549578
FZPJ01000009
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
89336
89410
+
Cys
GCA
[ENA]
¡û
>W1910549701
FZPN01000002
Campylobacterota
Helicobacter canadensis [FZPN]
177051
177125
+
Cys
GCA
[ENA]
¡û
>W1910549741
FZPO01000002
Campylobacterota
Helicobacter equorum [FZPO]
22564
22490
-
Cys
GCA
[ENA]
¡û
>W1910549779
FZPP01000004
Campylobacterota
Helicobacter marmotae [FZPP]
12389
12463
+
Cys
GCA
[ENA]
¡û
>W1910584306
JXTW01000015
Campylobacterota
Helicobacter anseris 2013ZJHSD2 [JXTW]
1038
964
-
Cys
GCA
[ENA]
¡û
>W1910584314
JXTX01000001
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
250612
250686
+
Cys
GCA
[ENA]
¡û
>W1910889359
NESU01000012
Campylobacterota
Helicobacter sp. TUL [NESU]
55426
55500
+
Cys
GCA
[ENA]
¡û
>W1910914946
NHYK01000021
Campylobacterota
Helicobacter sp. 10-6591 [NHYK]
20832
20758
-
Cys
GCA
[ENA]
¡û
>W1910914967
NHYL01000003
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
21515
21589
+
Cys
GCA
[ENA]
¡û
>W1910915012
NHYM01000014
Campylobacterota
Helicobacter sp. 16-1353 [NHYM]
28038
28112
+
Cys
GCA
[ENA]
¡û
>W1910915050
NHYN01000015
Campylobacterota
Helicobacter sp. 15-1451 [NHYN]
643
569
-
Cys
GCA
[ENA]
¡û
>W1911770801
QXJF01000005
Campylobacterota
Helicobacter labetoulli 48519 [QXJF]
6963
7037
+
Cys
GCA
[ENA]
¡û
>W1810002658
BEYY01000086
Campylobacterota
Helicobacter cinaedi P04D0736 [BEYY]
84996
84922
-
Cys
GCA
[ENA]
¡û
>W1810002705
BEYZ01000169
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
7020
7094
+
Cys
GCA
[ENA]
¡û
>W1810002747
BEZB01000228
Campylobacterota
Helicobacter cinaedi P07D0876 [BEZB]
30211
30137
-
Cys
GCA
[ENA]
¡û
>W1810002777
BEZC01000191
Campylobacterota
Helicobacter cinaedi P08D0905 [BEZC]
7023
7097
+
Cys
GCA
[ENA]
¡û
>W1810002805
BEZD01000069
Campylobacterota
Helicobacter cinaedi P09D0927 [BEZD]
84991
84917
-
Cys
GCA
[ENA]
¡û
>W1810002847
BEZE01000189
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
7021
7095
+
Cys
GCA
[ENA]
¡û
>W1810002884
BEZF01000157
Campylobacterota
Helicobacter cinaedi P11D0946 [BEZF]
7033
7107
+
Cys
GCA
[ENA]
¡û
>W1810002911
BEZG01000061
Campylobacterota
Helicobacter cinaedi P13D0979 [BEZG]
84974
84900
-
Cys
GCA
[ENA]
¡û
>W1810002951
BEZH01000046
Campylobacterota
Helicobacter cinaedi P14D1067 [BEZH]
7007
7081
+
Cys
GCA
[ENA]
¡û
>W1810002990
BEZI01000155
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
7001
7075
+
Cys
GCA
[ENA]
¡û
>W1810003037
BEZJ01000135
Campylobacterota
Helicobacter cinaedi P18D1268 [BEZJ]
7006
7080
+
Cys
GCA
[ENA]
¡û
>W1810003074
BEZK01000127
Campylobacterota
Helicobacter cinaedi P19D1315 [BEZK]
7005
7079
+
Cys
GCA
[ENA]
¡û
>W1810003088
BEZL01000051
Campylobacterota
Helicobacter cinaedi P20D1835 [BEZL]
84957
84883
-
Cys
GCA
[ENA]
¡û
>W1810003126
BEZM01000053
Campylobacterota
Helicobacter cinaedi CCUG18818 [BEZM]
12524
12450
-
Cys
GCA
[ENA]
¡û
>W1810003164
BEZN01000058
Campylobacterota
Helicobacter cinaedi P21D1863 [BEZN]
84983
84909
-
Cys
GCA
[ENA]
¡û
>W1810003218
BEZO01000202
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
7028
7102
+
Cys
GCA
[ENA]
¡û
>W1810003248
BEZP01000186
Campylobacterota
Helicobacter cinaedi P15D1072 [BEZP]
7015
7089
+
Cys
GCA
[ENA]
¡û
>W1810003277
BEZQ01000140
Campylobacterota
Helicobacter cinaedi P16D1106 [BEZQ]
23521
23447
-
Cys
GCA
[ENA]
¡û
>W1810003324
BEZR01000169
Campylobacterota
Helicobacter cinaedi P12D0946 [BEZR]
7051
7125
+
Cys
GCA
[ENA]
¡û
>W1810003350
BEZS01000063
Campylobacterota
Helicobacter cinaedi P11D1015 [BEZS]
85026
84952
-
Cys
GCA
[ENA]
¡û
>W1810010684
BGKD01000059
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
7016
7090
+
Cys
GCA
[ENA]
¡û
>W1810010715
BGKE01000052
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
7029
7103
+
Cys
GCA
[ENA]
¡û
>W1810010758
BGKF01000039
Campylobacterota
Helicobacter cinaedi PAGU617 [BGKF]
55961
55887
-
Cys
GCA
[ENA]
¡û
>W1810010787
BGKG01000029
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
22011
21937
-
Cys
GCA
[ENA]
¡û
>W1810010833
BGKH01000051
Campylobacterota
Helicobacter cinaedi PAGU628 [BGKH]
7044
7118
+
Cys
GCA
[ENA]
¡û
>W1810046461
NXLO01000001
Campylobacterota
Helicobacter sp. MIT 99-5507 [NXLO]
27513
27587
+
Cys
GCA
[ENA]
¡û
>W1810046589
NXLR01000003
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
137009
136935
-
Cys
GCA
[ENA]
¡û
>W1810046624
NXLS01000002
Campylobacterota
Helicobacter ganmani MIT 99-5101 [NXLS]
66969
66895
-
Cys
GCA
[ENA]
¡û
>W1810046667
NXLT01000004
Campylobacterota
Helicobacter equorum MIT 12-6600 [NXLT]
139958
140032
+
Cys
GCA
[ENA]
¡û
>C10107596
FN555004
Campylobacterota
Helicobacter mustelae 12198 [FN555004]
1245085
1245011
-
Cys
GCA
[Ensembl]
¡û
>W1511350774
JRMQ01000001
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
111741
111667
-
Cys
GCA
[ENA]
¡û
>W1511350865
JRMS01000080
Campylobacterota
Helicobacter sp. MIT 03-1614 [JRMS]
3018
3092
+
Cys
GCA
[ENA]
¡û
>W1511353099
JROY01000011
Campylobacterota
Helicobacter sp. MIT 03-1616 [JROY]
21349
21275
-
Cys
GCA
[ENA]
¡û
>W1511353127
JROZ01000001
Campylobacterota
Helicobacter sp. MIT 05-5293 [JROZ]
88337
88411
+
Cys
GCA
[ENA]
¡û
>W1511353181
JRPA01000408
Campylobacterota
Helicobacter sp. MIT 05-5294 [JRPA]
78
152
+
Cys
GCA
[ENA]
¡û
>W1511353191
JRPA01001252
Campylobacterota
Helicobacter sp. MIT 05-5294 [JRPA]
575
501
-
Cys
GCA
[ENA]
¡û
>W1511353250
JRPC01000042
Campylobacterota
Helicobacter apodemus MIT-03-7007 [JRPC]
11333
11259
-
Cys
GCA
[ENA]
¡û
>W1511353329
JRPE01000052
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
7085
7159
+
Cys
GCA
[ENA]
¡û
>W1511353365
JRPF01000002
Campylobacterota
Helicobacter typhlonius MIT 98-6810 [JRPF]
81585
81659
+
Cys
GCA
[ENA]
¡û
>W1511353852
JRPR01000039
Campylobacterota
Helicobacter jaachi MIT 09-6949 [JRPR]
258
184
-
Cys
GCA
[ENA]
¡û
>C121001362
AP012344
Campylobacterota
Helicobacter cinaedi PAGU611 [AP012344]
1511226
1511152
-
Cys
GCA
[Ensembl]
¡û
>C161108056
LN907858
Campylobacterota
Helicobacter typhlonius [LN907858]
1198510
1198436
-
Cys
GCA
[Ensembl]
¡û
>C131000549
AP012492
Campylobacterota
Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 [AP012492]
1647828
1647754
-
Cys
GCA
[Ensembl]
¡û
>W1610522054
JNOA01000004
Campylobacterota
Helicobacter pullorum [JNOA]
24432
24358
-
Cys
GCA
[ENA]
¡û
>W1610522089
JNOB01000001
Campylobacterota
Helicobacter pullorum [JNOB]
1516
1442
-
Cys
GCA
[ENA]
¡û
>W1610522126
JNOC01000015
Campylobacterota
Helicobacter pullorum [JNOC]
56585
56511
-
Cys
GCA
[ENA]
¡û
>W1610522210
JNUR01000004
Campylobacterota
Helicobacter pullorum [JNUR]
23623
23549
-
Cys
GCA
[ENA]
¡û
>W1611012073
LXWI01000050
Campylobacterota
Helicobacter pullorum [LXWI]
1602
1528
-
Cys
GCA
[ENA]
¡û
>W1611053098
MAJF01000018
Campylobacterota
Helicobacter pullorum [MAJF]
8894
8820
-
Cys
GCA
[ENA]
¡û
>W1611053148
MAJG01000098
Campylobacterota
Helicobacter pullorum [MAJG]
1600
1526
-
Cys
GCA
[ENA]
¡û
>W1611055707
MANJ01000078
Campylobacterota
Helicobacter pullorum [MANJ]
3287
3361
+
Cys
GCA
[ENA]
¡û
>W1611055713
MANK01000001
Campylobacterota
Helicobacter pullorum [MANK]
1615
1541
-
Cys
GCA
[ENA]
¡û
>W1611055841
MAOZ01000022
Campylobacterota
Helicobacter pullorum [MAOZ]
3221
3295
+
Cys
GCA
[ENA]
¡û
>W1611055881
MAPA01000067
Campylobacterota
Helicobacter pullorum [MAPA]
1505
1431
-
Cys
GCA
[ENA]
¡û
>W1611055898
MAPB01000013
Campylobacterota
Helicobacter pullorum [MAPB]
7028
6954
-
Cys
GCA
[ENA]
¡û
>W1611055954
MAPC01000057
Campylobacterota
Helicobacter pullorum [MAPC]
3318
3392
+
Cys
GCA
[ENA]
¡û
>W1611055990
MAPD01000069
Campylobacterota
Helicobacter pullorum [MAPD]
1497
1423
-
Cys
GCA
[ENA]
¡û
>W1611056027
MAPE01000068
Campylobacterota
Helicobacter pullorum [MAPE]
3259
3333
+
Cys
GCA
[ENA]
¡û
>W1710621980
JNOA01000004
Campylobacterota
Helicobacter pullorum [JNOA]
24432
24358
-
Cys
GCA
[ENA]
¡û
>W1710622015
JNOB01000001
Campylobacterota
Helicobacter pullorum [JNOB]
1516
1442
-
Cys
GCA
[ENA]
¡û
>W1710622052
JNOC01000015
Campylobacterota
Helicobacter pullorum [JNOC]
56585
56511
-
Cys
GCA
[ENA]
¡û
>W1710622136
JNUR01000004
Campylobacterota
Helicobacter pullorum [JNUR]
23623
23549
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK