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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341838 (26 seq.)
>W1711509548
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
494221
494150
-
Lys
TTT
[ENA]
¡û
>W1711509602
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
535149
535078
-
Lys
TTT
[ENA]
¡û
>PL171000194
AP018274
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid1
35414
35343
-
Lys
TTT
[ENA]
¡û
>C171064227
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
588529
588458
-
Lys
TTT
-
¡û
>W141004296
AFXD01000030
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
27817
27746
-
Lys
TTT
[ENA]
¡û
>W141096975
AVFZ01000168
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
4698
4627
-
Lys
TTT
[ENA]
¡û
>W141240131
CAFN01000246
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
2881
2810
-
Lys
TTT
[ENA]
¡û
>WENV170022254
BCQK01002935
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1154
1080
-
Lys
TTT
[ENA]
¢þ
>WENV170024451
BCQL01062593
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
48
121
+
Lys
TTT
[ENA]
¢þ
>WENV170025542
BCQL01354634
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
207
133
-
Lys
TTT
[ENA]
¢þ
>WENV170025686
BCQL01369428
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
71
-1
-
Lys
TTT
[ENA]
¢þ
>CHL1810015241
KM462886
Viridiplantae
Pseudochloris wilhelmii (KM462886)
57068
56997
-
Lys
TTT
[ENA]
¡û
>CHL1810050305
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
33154
33226
+
Lys
TTT
[ENA]
¡û
>CHL1810050480
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
35424
35495
+
Lys
TTT
[ENA]
¡û
>CHL1810058654
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
30317
30244
-
Lys
TTT
[ENA]
¡û
>C181004983
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
7200503
7200574
+
Lys
TTT
-
¡û
>C181169657
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
1048980
1049051
+
Lys
TTT
-
¡û
>W09113164
ABYK01000018
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
54639
54710
+
Lys
TTT
[ENA]
¡û
>W09134546
ACSK01000127
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
3796
3725
-
Lys
TTT
[ENA]
¡û
>W1810185584
PKGD01000367
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
2037
1966
-
Lys
TTT
[ENA]
¡û
>W10111337
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
84144
84215
+
Lys
TTT
[ENA]
¡û
>W11114280
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
84144
84215
+
Lys
TTT
[ENA]
¡û
>W11143164
AEPQ01000174
Cyanobacteriota
Moorena producens 3L [AEPQ]
545
616
+
Lys
TTT
[ENA]
¡û
>W1511585673
LAYT01000228
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
25850
25921
+
Lys
TTT
[ENA]
¡û
>C161049402
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
4456568
4456497
-
Lys
TTT
-
¡û
>C161103160
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
4576335
4576264
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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