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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.341873 (114 seq.)
>W1711250247
LYMV01000186
Alphaproteobacteria
Rickettsia sp. wb [LYMV]
2284
2358
+
Glu
TTC
[ENA]
¡û
>W1711250262
LYMW01000048
Alphaproteobacteria
Rickettsia sp. wq [LYMW]
2280
2354
+
Glu
TTC
[ENA]
¡û
>W131111737
APMN01000006
Alphaproteobacteria
Rickettsia prowazekii str. GvF12 [APMN]
100036
99962
-
Glu
TTC
[ENA]
¡û
>W131111781
APMO01000018
Alphaproteobacteria
Rickettsia prowazekii str. Cairo 3 [APMO]
219520
219594
+
Glu
TTC
[ENA]
¡û
>C171035061
CP015010
Alphaproteobacteria
Rickettsia bellii [CP015010]
232110
232036
-
Glu
TTC
-
¡û
>C171035088
CP015012
Alphaproteobacteria
Rickettsia amblyommatis [CP015012]
554074
554000
-
Glu
TTC
-
¡û
>C171086310
CP018913
Alphaproteobacteria
Rickettsia rickettsii Iowa [CP018913]
25897
25971
+
Glu
TTC
-
¡û
>C171086344
CP018914
Alphaproteobacteria
Rickettsia rickettsii Iowa [CP018914]
25908
25982
+
Glu
TTC
-
¡û
>W131045819
AMRT01000029
Alphaproteobacteria
Rickettsia japonica YH [AMRT]
24571
24645
+
Glu
TTC
[ENA]
¡û
>C018283
CP000087
Alphaproteobacteria
Rickettsia bellii RML369-C [CP000087]
201949
202023
+
Glu
TTC
[Ensembl]
¡û
>C018315
AE006914
Alphaproteobacteria
Rickettsia conorii str. Malish 7 [AE006914]
23116
23190
+
Glu
TTC
[Ensembl]
¡û
>C018557
CP000053
Alphaproteobacteria
Rickettsia felis URRWXCal2 URRWXCal2; California 2 [CP000053]
26143
26217
+
Glu
TTC
[Ensembl]
¡û
>C019071
AJ235269
Alphaproteobacteria
Rickettsia prowazekii [AJ235269]
19107
19181
+
Glu
TTC
[Ensembl]
¡û
>C019352
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
18164
18238
+
Glu
TTC
[Ensembl]
¡û
>w020505
AAUY01000001
Alphaproteobacteria
Rickettsia africae ESF-5 [AAUY]
23024
23098
+
Glu
TTC
[ENA]
¡û
>w017290
AARC01000001
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [AARC]
1346191
1346120
-
Glu
TTC
[ENA]
¡û
>w005057
AAFF01000001
Alphaproteobacteria
Rickettsia canadensis str. McKiel [AAFF]
19274
19348
+
Glu
TTC
[ENA]
¡û
>w005056
AAFE01000001
Alphaproteobacteria
Rickettsia akari str. Hartford [AAFE]
37791
37720
-
Glu
TTC
[ENA]
¡û
>w003232
AADJ01000001
Alphaproteobacteria
Rickettsia rickettsii [AADJ]
25907
25981
+
Glu
TTC
[ENA]
¡û
>w003010
AABW01000001
Alphaproteobacteria
Rickettsia sibirica 246 [AABW]
645297
645226
-
Glu
TTC
[ENA]
¡û
>W141147945
AWXL01000001
Alphaproteobacteria
Rickettsia gravesii gravesii BWI-1 [AWXL]
89340
89414
+
Glu
TTC
[ENA]
¡û
>C08008049
CP000409
Alphaproteobacteria
Rickettsia canadensis str. McKiel [CP000409]
19274
19348
+
Glu
TTC
[Ensembl]
¡û
>C08008356
CP000848
Alphaproteobacteria
Rickettsia rickettsii str. 'Sheila Smith' [CP000848]
25907
25981
+
Glu
TTC
[Ensembl]
¡û
>C08008036
CP000849
Alphaproteobacteria
Rickettsia bellii OSU 85-389 [CP000849]
1346191
1346120
-
Glu
TTC
[Ensembl]
¡û
>C08007950
CP000847
Alphaproteobacteria
Rickettsia akari str. Hartford [CP000847]
37791
37720
-
Glu
TTC
[Ensembl]
¡û
>W141255333
CBUA010000014
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [CBUA]
32441
32367
-
Glu
TTC
[ENA]
¡û
>C08008323
CP000766
Alphaproteobacteria
Rickettsia rickettsii str. Iowa [CP000766]
25897
25971
+
Glu
TTC
[Ensembl]
¡û
>W141264819
CCER01000007
Alphaproteobacteria
Rickettsia aeschlimannii [CCER]
92625
92699
+
Glu
TTC
[ENA]
¡û
>W141266210
CCMG01000012
Alphaproteobacteria
Rickettsia tamurae [CCMG]
27491
27565
+
Glu
TTC
[ENA]
¡û
>WENV170498027
CEVS01392506
[CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
205
279
+
Glu
TTC
[ENA]
¢þ
>WENV170793406
MDSV01115668
[MDSV] marine metagenome; seawater
35304
35378
+
Glu
TTC
[ENA]
¢þ
>W141464113
JFKF01000062
Alphaproteobacteria
Rickettsia tamurae ISO7 [JFKF]
8259
8333
+
Glu
TTC
[ENA]
¡û
>C181002256
AP017572
Alphaproteobacteria
Rickettsia japonica DT-1 [AP017572]
27066
27140
+
Glu
TTC
-
¡û
>C181002289
AP017573
Alphaproteobacteria
Rickettsia japonica HH-1 [AP017573]
26982
27056
+
Glu
TTC
-
¡û
>C181002322
AP017574
Alphaproteobacteria
Rickettsia japonica HH06154 [AP017574]
27066
27140
+
Glu
TTC
-
¡û
>C181002355
AP017575
Alphaproteobacteria
Rickettsia japonica HH07124 [AP017575]
27066
27140
+
Glu
TTC
-
¡û
>C181002388
AP017576
Alphaproteobacteria
Rickettsia japonica HH07167 [AP017576]
27066
27140
+
Glu
TTC
-
¡û
>C181002421
AP017577
Alphaproteobacteria
Rickettsia japonica MZ08014 [AP017577]
27066
27140
+
Glu
TTC
-
¡û
>C181002454
AP017578
Alphaproteobacteria
Rickettsia japonica Nakase [AP017578]
27066
27140
+
Glu
TTC
-
¡û
>C181002487
AP017579
Alphaproteobacteria
Rickettsia japonica OHH-1 [AP017579]
26637
26711
+
Glu
TTC
-
¡û
>C181002520
AP017580
Alphaproteobacteria
Rickettsia japonica PO-1 [AP017580]
26982
27056
+
Glu
TTC
-
¡û
>C181002553
AP017581
Alphaproteobacteria
Rickettsia japonica Tsuneishi [AP017581]
27066
27140
+
Glu
TTC
-
¡û
>C181002586
AP017602
Alphaproteobacteria
Rickettsia japonica YH_M [AP017602]
27066
27140
+
Glu
TTC
-
¡û
>C181019124
CP016305
Alphaproteobacteria
Rickettsia sp. MEAM1 [Bemisia tabaci] [CP016305]
760866
760792
-
Glu
TTC
-
¡û
>C191083851
CP032049
Alphaproteobacteria
Rickettsia japonica LA4/2015 [CP032049]
26637
26711
+
Glu
TTC
-
¡û
>C191108646
CP033611
Alphaproteobacteria
Rickettsiales endosymbiont of Stachyamoeba lipophora RICK01 [CP033611]
361905
361831
-
Glu
TTC
-
¡û
>C191176558
CP040325
Alphaproteobacteria
Rickettsia parkeri Atlantic Rainforest [CP040325]
23315
23389
+
Glu
TTC
-
¡û
>C191225745
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
18164
18238
+
Glu
TTC
-
¡û
>W09127580
ACLC01000096
Alphaproteobacteria
Rickettsia endosymbiont of Ixodes scapularis [ACLC]
6367
6441
+
Glu
TTC
[ENA]
¡û
>C09108617
CP001612
Alphaproteobacteria
Rickettsia africae ESF-5 [CP001612]
23024
23098
+
Glu
TTC
[Ensembl]
¡û
>C09108959
CP001227
Alphaproteobacteria
Rickettsia peacockii str. Rustic [CP001227]
168208
168282
+
Glu
TTC
[Ensembl]
¡û
>W1911517945
OFAL01000006
Alphaproteobacteria
Rickettsia fournieri AUS118 [OFAL]
474839
474913
+
Glu
TTC
[ENA]
¡û
>C151008528
CP006009
Alphaproteobacteria
Rickettsia rickettsii str. R [CP006009]
25907
25981
+
Glu
TTC
[Ensembl]
¡û
>C151008562
CP006010
Alphaproteobacteria
Rickettsia rickettsii str. Morgan [CP006010]
25897
25971
+
Glu
TTC
[Ensembl]
¡û
>C151094958
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
117487
117413
-
Glu
TTC
-
¡û
>C151104122
LN794217
Alphaproteobacteria
Rickettsia monacensis IrR/Munich [LN794217]
269069
268995
-
Glu
TTC
[Ensembl]
¡û
>W1510060649
CCXM01000001
Alphaproteobacteria
Rickettsia hoogstraalii Croatica [CCXM]
764082
764156
+
Glu
TTC
[ENA]
¡û
>C11118561
CP002912
Alphaproteobacteria
Rickettsia conorii subsp. heilongjiangensis 054 [CP002912]
26054
26128
+
Glu
TTC
[Ensembl]
¡û
>C11118782
CP001584
Alphaproteobacteria
Rickettsia prowazekii str. Rp22 [CP001584]
19122
19196
+
Glu
TTC
[Ensembl]
¡û
>W1511365661
JSEL01000001
Alphaproteobacteria
Rickettsia felis LSU-Lb [JSEL]
34437
34511
+
Glu
TTC
[ENA]
¡û
>W1511365694
JSEM01000001
Alphaproteobacteria
Rickettsia felis str. LSU [JSEM]
21097
21023
-
Glu
TTC
[ENA]
¡û
>W1511489437
JWSW01000046
Alphaproteobacteria
Rickettsia asembonensis asemboensis NMRCii [JWSW]
6449
6523
+
Glu
TTC
[ENA]
¡û
>W1511574244
LANQ01000001
Alphaproteobacteria
Rickettsia felis str. Pedreira [LANQ]
804771
804697
-
Glu
TTC
[ENA]
¡û
>W1511574280
LANR01000001
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Ac/Pa [LANR]
310822
310748
-
Glu
TTC
[ENA]
¡û
>W1511574631
LAOB01000001
Alphaproteobacteria
Rickettsia hoogstraalii str. RCCE3 [LAOB]
797562
797488
-
Glu
TTC
[ENA]
¡û
>W1511574843
LAOH01000026
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Darkwater [LAOH]
9183
9109
-
Glu
TTC
[ENA]
¡û
>W1511574866
LAOI01000001
Alphaproteobacteria
Rickettsia bellii str. RML An4 [LAOI]
49083
49157
+
Glu
TTC
[ENA]
¡û
>W1511574920
LAOJ01000001
Alphaproteobacteria
Rickettsia bellii str. RML Mogi [LAOJ]
1020320
1020246
-
Glu
TTC
[ENA]
¡û
>W1511574963
LAOK01000001
Alphaproteobacteria
Rickettsia parkeri str. Grand Bay [LAOK]
113012
112938
-
Glu
TTC
[ENA]
¡û
>W1511574977
LAOL01000001
Alphaproteobacteria
Rickettsia parkeri str. AT#24 [LAOL]
653515
653589
+
Glu
TTC
[ENA]
¡û
>W1511575076
LAOO01000001
Alphaproteobacteria
Rickettsia parkeri str. Tate's Hell [LAOO]
69586
69512
-
Glu
TTC
[ENA]
¡û
>W1511575131
LAOQ01000003
Alphaproteobacteria
Rickettsia argasii T170-B [LAOQ]
22827
22753
-
Glu
TTC
[ENA]
¡û
>C121000172
AP011533
Alphaproteobacteria
Rickettsia japonica YH [AP011533]
26206
26280
+
Glu
TTC
[Ensembl]
¡û
>C121002565
CP002428
Alphaproteobacteria
Rickettsia slovaca 13-B [CP002428]
26452
26526
+
Glu
TTC
[Ensembl]
¡û
>C121010367
CP003304
Alphaproteobacteria
Rickettsia canadensis str. CA410 [CP003304]
19212
19286
+
Glu
TTC
[Ensembl]
¡û
>C121010414
CP003305
Alphaproteobacteria
Rickettsia rickettsii str. Brazil [CP003305]
1143039
1142965
-
Glu
TTC
[Ensembl]
¡û
>C121010433
CP003306
Alphaproteobacteria
Rickettsia rickettsii str. Colombia [CP003306]
25907
25981
+
Glu
TTC
[Ensembl]
¡û
>C121010467
CP003307
Alphaproteobacteria
Rickettsia rickettsii str. Arizona [CP003307]
25899
25973
+
Glu
TTC
[Ensembl]
¡û
>C121010501
CP003308
Alphaproteobacteria
Rickettsia philipii str. 364D [CP003308]
24184
24258
+
Glu
TTC
[Ensembl]
¡û
>C121010534
CP003309
Alphaproteobacteria
Rickettsia rickettsii str. Hino [CP003309]
25984
26058
+
Glu
TTC
[Ensembl]
¡û
>C121010568
CP003311
Alphaproteobacteria
Rickettsia rickettsii str. Hlp#2 [CP003311]
25943
26017
+
Glu
TTC
[Ensembl]
¡û
>C121010770
CP003318
Alphaproteobacteria
Rickettsia rickettsii str. Hauke [CP003318]
25896
25970
+
Glu
TTC
[Ensembl]
¡û
>C121011224
CP003334
Alphaproteobacteria
Rickettsia amblyommatis str. GAT-30V [CP003334]
117597
117523
-
Glu
TTC
[Ensembl]
¡û
>C121011228
CP003338
Alphaproteobacteria
Rickettsia australis str. Cutlack [CP003338]
43726
43800
+
Glu
TTC
[Ensembl]
¡û
>C121011270
CP003340
Alphaproteobacteria
Rickettsia montanensis str. OSU 85-930 [CP003340]
745983
746057
+
Glu
TTC
[Ensembl]
¡û
>C121011293
CP003341
Alphaproteobacteria
Rickettsia parkeri str. Portsmouth [CP003341]
26245
26319
+
Glu
TTC
[Ensembl]
¡û
>C121011357
CP003342
Alphaproteobacteria
Rickettsia rhipicephali str. 3-7-female6-CWPP [CP003342]
86932
86858
-
Glu
TTC
[Ensembl]
¡û
>C121011757
CP003375
Alphaproteobacteria
Rickettsia slovaca str. D-CWPP [CP003375]
26449
26523
+
Glu
TTC
[Ensembl]
¡û
>C121012150
CP003391
Alphaproteobacteria
Rickettsia prowazekii str. Chernikova [CP003391]
19121
19195
+
Glu
TTC
[Ensembl]
¡û
>C121012183
CP003392
Alphaproteobacteria
Rickettsia prowazekii str. Katsinyian [CP003392]
19108
19182
+
Glu
TTC
[Ensembl]
¡û
>C121012216
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
19115
19189
+
Glu
TTC
[Ensembl]
¡û
>C121012249
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
19122
19196
+
Glu
TTC
[Ensembl]
¡û
>C121012286
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
361045
361119
+
Glu
TTC
[Ensembl]
¡û
>C121012315
CP003396
Alphaproteobacteria
Rickettsia prowazekii str. RpGvF24 [CP003396]
19109
19183
+
Glu
TTC
[Ensembl]
¡û
>C121012348
CP003397
Alphaproteobacteria
Rickettsia typhi str. TH1527 [CP003397]
18164
18238
+
Glu
TTC
[Ensembl]
¡û
>C121012381
CP003398
Alphaproteobacteria
Rickettsia typhi str. B9991CWPP [CP003398]
18164
18238
+
Glu
TTC
[Ensembl]
¡û
>C161030372
CP010969
Alphaproteobacteria
Rickettsia conorii subsp. raoultii Khabarovsk [CP010969]
26909
26983
+
Glu
TTC
[Ensembl]
¡û
>C161051809
CP013133
Alphaproteobacteria
Rickettsia rhipicephali HJ#5 [CP013133]
55153
55227
+
Glu
TTC
[Ensembl]
¡û
>C161078721
CP014865
Alphaproteobacteria
Rickettsia prowazekii Naples-1 [CP014865]
19122
19196
+
Glu
TTC
-
¡û
>W121033387
AHIZ01000008
Alphaproteobacteria
Rickettsia sibirica subsp. sibirica BJ-90 [AHIZ]
100515
100589
+
Glu
TTC
[ENA]
¡û
>W121067868
AJTT01000004
Alphaproteobacteria
Rickettsia honei RB [AJTT]
102961
103035
+
Glu
TTC
[ENA]
¡û
>W121068474
AJUR01000001
Alphaproteobacteria
Rickettsia conorii subsp. caspia A-167 [AJUR]
2517
2591
+
Glu
TTC
[ENA]
¡û
>W121069142
AJVP01000001
Alphaproteobacteria
Rickettsia conorii subsp. israelensis ISTT CDC1 [AJVP]
64578
64652
+
Glu
TTC
[ENA]
¡û
>W121070041
AJWD01000187
Alphaproteobacteria
Rickettsia sp. MEAM1 (Bemisia tabaci) [AJWD]
2462
2536
+
Glu
TTC
[ENA]
¡û
>W121102308
AKVZ01000001
Alphaproteobacteria
Rickettsia australis str. Phillips [AKVZ]
17886
17812
-
Glu
TTC
[ENA]
¡û
>W121045282
AICO01000001
Alphaproteobacteria
Rickettsia helvetica C9P9 [AICO]
96987
96913
-
Glu
TTC
[ENA]
¡û
>W121061854
AJHC01000001
Alphaproteobacteria
Rickettsia conorii subsp. indica ITTR [AJHC]
100952
101026
+
Glu
TTC
[ENA]
¡û
>W121044073
AHZB01000001
Alphaproteobacteria
Rickettsia sibirica subsp. mongolitimonae HA-91 [AHZB]
52041
51967
-
Glu
TTC
[ENA]
¡û
>W1610061541
BCMR01000007
Alphaproteobacteria
Rickettsia sp. Tenjiku01 [BCMR]
2105
2179
+
Glu
TTC
[ENA]
¡û
>C131014601
CP004888
Alphaproteobacteria
Rickettsia prowazekii str. NMRC Madrid E [CP004888]
164935
164861
-
Glu
TTC
[Ensembl]
¡û
>C131014623
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
748268
748194
-
Glu
TTC
[Ensembl]
¡û
>W1610596637
LECS01000001
Alphaproteobacteria
Rickettsia endosymbiont of Proechinophthirus fluctus [LECS]
130603
130529
-
Glu
TTC
[ENA]
¡û
>W1710059206
BCMR01000007
Alphaproteobacteria
Rickettsia sp. Tenjiku01 [BCMR]
2105
2179
+
Glu
TTC
[ENA]
¡û
>W1710717642
LECS01000001
Alphaproteobacteria
Rickettsia endosymbiont of Proechinophthirus fluctus [LECS]
130603
130529
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK