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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342006 (55 seq.)
>W1710879764
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
445512
445439
-
Gly
GCC
[ENA]
¡û
>W1711003295
LQGY01000025
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
27063
27136
+
Gly
GCC
[ENA]
¡û
>W1711501569
MKRT01000028
Actinomycetota
Microbacterium sp. 69-10 [MKRT]
11254
11179
-
Gly
GCC
[ENA]
¡û
>W131218466
ATXT01000011
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
335662
335587
-
Gly
GCC
[ENA]
¡û
>W131235243
AULK01000001
Actinomycetota
Gryllotalpicola ginsengisoli DSM 22003 [AULK]
312391
312316
-
Gly
GCC
[ENA]
¡û
>W131225810
AUDX01000004
Actinomycetota
Gulosibacter molinativorax DSM 13485 [AUDX]
336
261
-
Gly
GCC
[ENA]
¡û
>WENV180103017
OAPA01000119
[OAPA] marine metagenome; ENVO:00002010
3726
3653
-
Gly
GCC
[ENA]
¢þ
>WENV180208940
OBAK01000386
[OBAK] marine metagenome; ENVO.00002150
1923
1996
+
Gly
GCC
[ENA]
¢þ
>WENV180212241
OBAN01001344
[OBAN] marine metagenome; ENVO 00002150
327
254
-
Gly
GCC
[ENA]
¢þ
>WENV180360491
OBNU01000206
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
5793
5866
+
Gly
GCC
[ENA]
¢þ
>WENV180361743
OBNW01000234
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
4745
4818
+
Gly
GCC
[ENA]
¢þ
>WENV180365019
OBOB01003184
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
449
376
-
Gly
GCC
[ENA]
¢þ
>WENV180366043
OBOC01101662
[OBOC] marine metagenome; ocean water
288
215
-
Gly
GCC
[ENA]
¢þ
>WENV180367950
OBOF01012235
[OBOF] marine metagenome; ENVO:00002010
236
309
+
Gly
GCC
[ENA]
¢þ
>WENV180376633
OBOM01043079
[OBOM] marine metagenome; Seawater
336
409
+
Gly
GCC
[ENA]
¢þ
>WENV180382038
OBOS01083591
[OBOS] marine metagenome; ENVO 00002150
240
313
+
Gly
GCC
[ENA]
¢þ
>WENV180591247
OCOV01005236
[OCOV] marine metagenome; ENVO:01000301
384
457
+
Gly
GCC
[ENA]
¢þ
>WENV181120601
OEFK01016328
[OEFK] marine metagenome; ENVO:00002010 seawater
264
191
-
Gly
GCC
[ENA]
¢þ
>W141170804
AXYY01000100
Actinomycetota
Candidatus Ancillula trichonymphae trichonymphae ImTpAt1 [AXYY]
3474
3549
+
Gly
GCC
[ENA]
¡û
>WENV183729425
PJTQ01038241
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
425
498
+
Gly
GCC
[ENA]
¢þ
>C181109995
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1468010
1468083
+
Gly
GCC
-
¡û
>C181109998
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1468353
1468428
+
Gly
GCC
-
¡û
>C181110000
CP024988
Actinomycetota
Corynebacterium provencense 17KM38 [CP024988]
1468593
1468668
+
Gly
GCC
-
¡û
>C191130436
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
2270720
2270647
-
Gly
GCC
-
¡û
>W1810387060
PXVE01000017
Actinomycetota
Gulosibacter molinativorax ON4 [PXVE]
66048
66121
+
Gly
GCC
[ENA]
¡û
>W1810387087
PXVE01000122
Actinomycetota
Gulosibacter molinativorax ON4 [PXVE]
542
469
-
Gly
GCC
[ENA]
¡û
>W1810743450
QORO01000001
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
762176
762103
-
Gly
GCC
[ENA]
¡û
>W1810743453
QORO01000001
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
761860
761787
-
Gly
GCC
[ENA]
¡û
>W1810743479
QORO01000006
Actinomycetota
Microbacterium sorbitolivorans C1.15228 [QORO]
7787
7862
+
Gly
GCC
[ENA]
¡û
>W1510063981
CDAR01000010
Actinomycetota
Microbacterium gorillae G3 [CDAR]
334134
334209
+
Gly
GCC
[ENA]
¡û
>W1510063984
CDAR01000010
Actinomycetota
Microbacterium gorillae G3 [CDAR]
344067
344142
+
Gly
GCC
[ENA]
¡û
>W10124069
AEAU01000070
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
85790
85863
+
Gly
GCC
[ENA]
¡û
>W11130906
AEAU01000070
Actinomycetota
Corynebacterium variabile DSM 44702 [AEAU]
85790
85863
+
Gly
GCC
[ENA]
¡û
>W11164136
AFIZ01000003
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
56849
56776
-
Gly
GCC
[ENA]
¡û
>W11164139
AFIZ01000003
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
56517
56442
-
Gly
GCC
[ENA]
¡û
>W11164141
AFIZ01000003
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
56292
56219
-
Gly
GCC
[ENA]
¡û
>W1610069523
BCSO01000001
Actinomycetota
Pseudoclavibacter alba NBRC 15616 [BCSO]
441791
441866
+
Gly
GCC
[ENA]
¡û
>W1610163620
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149558
149631
+
Gly
GCC
[ENA]
¡û
>W1610163623
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149891
149966
+
Gly
GCC
[ENA]
¡û
>W1610163625
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
150127
150200
+
Gly
GCC
[ENA]
¡û
>W1610419391
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1870
1797
-
Gly
GCC
[ENA]
¡û
>W1610419394
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1527
1452
-
Gly
GCC
[ENA]
¡û
>W1610419396
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1287
1212
-
Gly
GCC
[ENA]
¡û
>C131005352
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1446744
1446671
-
Gly
GCC
[Ensembl]
¡û
>C131005355
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1446413
1446338
-
Gly
GCC
[Ensembl]
¡û
>C131005357
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1446188
1446113
-
Gly
GCC
[Ensembl]
¡û
>W1610742110
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
445512
445439
-
Gly
GCC
[ENA]
¡û
>W1610853860
LQGY01000025
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
27063
27136
+
Gly
GCC
[ENA]
¡û
>W1710066896
BCSO01000001
Actinomycetota
Pseudoclavibacter alba NBRC 15616 [BCSO]
441791
441866
+
Gly
GCC
[ENA]
¡û
>W1710165287
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149558
149631
+
Gly
GCC
[ENA]
¡û
>W1710165290
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
149891
149966
+
Gly
GCC
[ENA]
¡û
>W1710165292
FAUH01000004
Actinomycetota
Corynebacterium variabile [FAUH]
150127
150200
+
Gly
GCC
[ENA]
¡û
>W1710419127
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1870
1797
-
Gly
GCC
[ENA]
¡û
>W1710419130
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1527
1452
-
Gly
GCC
[ENA]
¡û
>W1710419132
FIZC01000001
Actinomycetota
Corynebacterium provencense SN15 [FIZC]
1287
1212
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK