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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342278 (17 seq.)
>WENV170981080
MWVT01023905
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
274
203
-
Met
CAT
[ENA]
¢þ
>WENV170981388
MWVT01080399
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
319
391
+
Met
CAT
[ENA]
¢þ
>WENV170982076
MWVU01009568
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
396
324
-
Met
CAT
[ENA]
¢þ
>WENV170982670
MWVU01189860
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
302
231
-
Met
CAT
[ENA]
¢þ
>WENV170983280
MWVV01017430
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1444
1515
+
Met
CAT
[ENA]
¢þ
>WENV170983728
MWVV01079569
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
343
272
-
Met
CAT
[ENA]
¢þ
>WENV170984288
MWVV01221847
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
122
194
+
Met
CAT
[ENA]
¢þ
>WENV170986414
MWVX01037947
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
668
597
-
Met
CAT
[ENA]
¢þ
>WENV170989637
MWVZ01069723
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
228
301
+
Met
CAT
[ENA]
¢þ
>WENV170989866
MWVZ01127213
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
364
291
-
Met
CAT
[ENA]
¢þ
>WENV170989901
MWVZ01142985
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
362
435
+
Met
CAT
[ENA]
¢þ
>WENV170990839
MWWA01055672
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
693
620
-
Met
CAT
[ENA]
¢þ
>WENV170990939
MWWA01074824
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
587
660
+
Met
CAT
[ENA]
¢þ
>WENV170991493
MWWA01212578
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
175
102
-
Met
CAT
[ENA]
¢þ
>WENV170991522
MWWA01222736
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
314
241
-
Met
CAT
[ENA]
¢þ
>WENV170993922
MWWC01042051
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
229
158
-
Met
CAT
[ENA]
¢þ
>SRA1003492
SRR002326.504166
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
229
158
-
Met
CAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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