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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342383 (90 seq.)
>W1710856274
LLZH01000085
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
265363
265438
+
Ala
GGC
[ENA]
¡û
>W1710877448
LMQC01000020
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
38474
38549
+
Ala
GGC
[ENA]
¡û
>W1710934818
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
1234564
1234639
+
Ala
GGC
[ENA]
¡û
>C171131346
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
1156225
1156150
-
Ala
GGC
-
¡û
>W131165181
ARBJ01000030
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
692
617
-
Ala
GGC
[ENA]
¡û
>W131165598
ARBS01000002
Actinomycetota
Longispora albida DSM 44784 [ARBS]
610538
610613
+
Ala
GGC
[ENA]
¡û
>W131217665
ATXA01000005
Actinomycetota
Frankia sp. Iso899 [ATXA]
229239
229314
+
Ala
GGC
[ENA]
¡û
>WENV180016966
FSWJ01000046
[FSWJ] metagenome; soil
2958
3031
+
Ala
GGC
[ENA]
¢þ
>WENV180017001
FSWJ01000394
[FSWJ] metagenome; soil
26
99
+
Ala
GGC
[ENA]
¢þ
>WENV180023922
FTIF01004099
[FTIF] metagenome; soil
1038
965
-
Ala
GGC
[ENA]
¢þ
>WENV180343589
OBLK01042941
[OBLK] soil metagenome; Clay
334
410
+
Ala
GGC
[ENA]
¢þ
>WENV180634158
OCRA01240109
[OCRA] human gut metagenome; human gut
196
122
-
Ala
GGC
[ENA]
¢þ
>WENV183748527
PPFU01049691
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2733
2807
+
Ala
GGC
[ENA]
¢þ
>WENV183748775
PPFU01079703
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3977
3903
-
Ala
GGC
[ENA]
¢þ
>WENV183749617
PPFU01191509
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3320
3394
+
Ala
GGC
[ENA]
¢þ
>WENV183750129
PPFU01260330
[PPFU] hypolithon metagenome; Antarctic Hypolithon
692
618
-
Ala
GGC
[ENA]
¢þ
>W141452113
JFBT01000001
Actinomycetota
Cryptosporangium arvum DSM 44712 [JFBT]
1196004
1196079
+
Ala
GGC
[ENA]
¡û
>C181078631
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
1156241
1156167
-
Ala
GGC
-
¡û
>W141558033
JHVP01000007
Actinomycetota
Geodermatophilaceae bacterium URHA0031 [JHVP]
233936
234011
+
Ala
GGC
[ENA]
¡û
>W141730418
JNII01000006
Actinomycetota
Geodermatophilaceae bacterium URHB0048 [JNII]
837969
838044
+
Ala
GGC
[ENA]
¡û
>W141730526
JNIK01000013
Actinomycetota
Blastococcus sp. URHD0036 [JNIK]
232838
232763
-
Ala
GGC
[ENA]
¡û
>W141757515
JNXY01000006
Actinomycetota
Catenuloplanes japonicus [JNXY]
404743
404818
+
Ala
GGC
[ENA]
¡û
>W141758310
JNYN01000842
Actinomycetota
Actinoplanes liguriensis [JNYN]
2294
2219
-
Ala
GGC
[ENA]
¡û
>W141758644
JNYT01000129
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
443
518
+
Ala
GGC
[ENA]
¡û
>W09109038
ABTU01000009
Actinomycetota
Geodermatophilus obscurus DSM 43160 [ABTU]
62208
62133
-
Ala
GGC
[ENA]
¡û
>W09109511
ABUH01000010
Actinomycetota
Nakamurella multipartita DSM 44233 [ABUH]
150702
150777
+
Ala
GGC
[ENA]
¡û
>C141004716
CP006272
Actinomycetota
Actinoplanes friuliensis DSM 7358 [CP006272]
1296828
1296903
+
Ala
GGC
[Ensembl]
¡û
>W1910547176
FZNO01000021
Actinomycetota
Blastococcus mobilis DSM 44272 [FZNO]
56799
56873
+
Ala
GGC
[ENA]
¡û
>W1910547335
FZNR01000009
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
314877
314803
-
Ala
GGC
[ENA]
¡û
>W1910548121
FZOH01000005
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
326802
326876
+
Ala
GGC
[ENA]
¡û
>W1910994808
NKYE01000014
Actinomycetota
Amycolatopsis antarctica AU-G6 [NKYE]
12971
13045
+
Ala
GGC
[ENA]
¡û
>W1911385165
NVPT01000149
Actinomycetota
Geodermatophilus chilensis B12 [NVPT]
10354
10280
-
Ala
GGC
[ENA]
¡û
>W1911492063
OBDO01000001
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
81613
81687
+
Ala
GGC
[ENA]
¡û
>W1911495738
OBQI01000001
Actinomycetota
Blastococcus aggregatus DSM 4725 [OBQI]
291711
291637
-
Ala
GGC
[ENA]
¡û
>W1911497451
OCNK01000003
Actinomycetota
Blastococcus haudaquaticus DSM 44270 [OCNK]
944843
944917
+
Ala
GGC
[ENA]
¡û
>W1911676731
QHHV01000255
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
3653
3579
-
Ala
GGC
[ENA]
¡û
>W1911678804
QHJK01000007
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
298963
299036
+
Ala
GGC
[ENA]
¡û
>W1911681229
QJUG01000327
Actinomycetota
Allorhizocola rhizosphaerae CPCC 204380 [QJUG]
5646
5721
+
Ala
GGC
[ENA]
¡û
>W1911765400
QXCQ01000091
Actinomycetota
Nakamurella silvestris DSM 102309 [QXCQ]
80735
80661
-
Ala
GGC
[ENA]
¡û
>W1810222196
POQU01000031
Actinomycetota
Blastococcus atacamensis P6 [POQU]
23586
23512
-
Ala
GGC
[ENA]
¡û
>W1810356486
PVMZ01000001
Actinomycetota
Actinoplanes italicus DSM 43146 [PVMZ]
350023
349949
-
Ala
GGC
[ENA]
¡û
>W1810368147
PVZG01000009
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
100112
100185
+
Ala
GGC
[ENA]
¡û
>W1810531639
QCXS01000002
Actinomycetota
Nakamurella deserti 12Sc4-1 [QCXS]
1632121
1632048
-
Ala
GGC
[ENA]
¡û
>W1810596627
QGGR01000010
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
34962
35036
+
Ala
GGC
[ENA]
¡û
>W1810676847
QKMH01000002
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
299367
299293
-
Ala
GGC
[ENA]
¡û
>W1810679003
QKNV01000037
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
16554
16480
-
Ala
GGC
[ENA]
¡û
>W1810694898
QLMJ01000003
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
267513
267440
-
Ala
GGC
[ENA]
¡û
>W1810733403
QOHF01000036
Actinomycetota
Geodermatophilus sp. TF02-6 [QOHF]
21695
21769
+
Ala
GGC
[ENA]
¡û
>W1810733498
QOHH01000016
Actinomycetota
Blastococcus sp. TF02-9 [QOHH]
10534
10460
-
Ala
GGC
[ENA]
¡û
>W1810733513
QOHI01000001
Actinomycetota
Blastococcus sp. TBT05-19 [QOHI]
859708
859782
+
Ala
GGC
[ENA]
¡û
>W1810733568
QOHJ01000003
Actinomycetota
Blastococcus sp. TF02A-30 [QOHJ]
117332
117258
-
Ala
GGC
[ENA]
¡û
>W1810915007
QVQH01000011
Actinomycetota
Geodermatophilus sp. LHW52908 [QVQH]
85658
85732
+
Ala
GGC
[ENA]
¡û
>C10109874
CP001737
Actinomycetota
Nakamurella multipartita DSM 44233 [CP001737]
1852042
1852117
+
Ala
GGC
[Ensembl]
¡û
>W1511307069
JPMX01000008
Actinomycetota
Modestobacter caceresii KNN45-2b [JPMX]
19890
19815
-
Ala
GGC
[ENA]
¡û
>W1511355802
JRTT01000002
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
117356
117281
-
Ala
GGC
[ENA]
¡û
>W1511545113
JZKF01000023
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
45731
45656
-
Ala
GGC
[ENA]
¡û
>C121001033
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
960163
960238
+
Ala
GGC
[Ensembl]
¡û
>C121016099
FO117623
Actinomycetota
Blastococcus saxobsidens DD2 [FO117623]
1037901
1037976
+
Ala
GGC
[Ensembl]
¡û
>C121016197
FO203431
Actinomycetota
Modestobacter marinus BC501 [FO203431]
1289426
1289501
+
Ala
GGC
[Ensembl]
¡û
>W1610052389
BBHW01000035
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
4362
4287
-
Ala
GGC
[ENA]
¡û
>W1610052461
BBHX01000531
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
526
601
+
Ala
GGC
[ENA]
¡û
>W1610052521
BBHY01001781
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
326
251
-
Ala
GGC
[ENA]
¡û
>W1610052526
BBHZ01000017
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
4188
4113
-
Ala
GGC
[ENA]
¡û
>W1610052672
BBIC01000680
Actinomycetota
Catenuloplanes castaneus JCM 9537 [BBIC]
371
446
+
Ala
GGC
[ENA]
¡û
>W1610718655
LLZH01000085
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
265363
265438
+
Ala
GGC
[ENA]
¡û
>W1610739794
LMQC01000020
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
38474
38549
+
Ala
GGC
[ENA]
¡û
>W1610781193
LOBU01000003
Actinomycetota
Amycolatopsis regifaucium [LOBU]
345929
345856
-
Ala
GGC
[ENA]
¡û
>W1610792306
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
1234564
1234639
+
Ala
GGC
[ENA]
¡û
>W1710048767
BBHW01000035
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
4362
4287
-
Ala
GGC
[ENA]
¡û
>W1710048839
BBHX01000531
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
526
601
+
Ala
GGC
[ENA]
¡û
>W1710048899
BBHY01001781
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
326
251
-
Ala
GGC
[ENA]
¡û
>W1710048904
BBHZ01000017
Actinomycetota
Catenuloplanes indicus JCM 9534 [BBHZ]
4188
4113
-
Ala
GGC
[ENA]
¡û
>W1710049050
BBIC01000680
Actinomycetota
Catenuloplanes castaneus JCM 9537 [BBIC]
371
446
+
Ala
GGC
[ENA]
¡û
>W1710506069
FMUH01000001
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
70607
70532
-
Ala
GGC
[ENA]
¡û
>W1710514351
FNAW01000005
Actinomycetota
Blastococcus fimeti DSM 44205 [FNAW]
202839
202914
+
Ala
GGC
[ENA]
¡û
>W1710515358
FNBT01000002
Actinomycetota
Blastococcus aurantiacus DSM 44268 [FNBT]
145235
145160
-
Ala
GGC
[ENA]
¡û
>W1710515983
FNCF01000007
Actinomycetota
Klenkia brasiliensis [FNCF]
115699
115774
+
Ala
GGC
[ENA]
¡û
>W1710522424
FNHE01000003
Actinomycetota
Geodermatophilus siccatus [FNHE]
246022
246097
+
Ala
GGC
[ENA]
¡û
>W1710524354
FNIR01000001
Actinomycetota
Klenkia soli [FNIR]
82066
81991
-
Ala
GGC
[ENA]
¡û
>W1710530486
FNOT01000016
Actinomycetota
Geodermatophilus africanus [FNOT]
53928
54003
+
Ala
GGC
[ENA]
¡û
>W1710544061
FOAO01000005
Actinomycetota
Blastococcus sp. DSM 46786 [FOAO]
168344
168419
+
Ala
GGC
[ENA]
¡û
>W1710548986
FOEE01000009
Actinomycetota
Trujillella endophytica endophyticus [FOEE]
172644
172569
-
Ala
GGC
[ENA]
¡û
>W1710554070
FOIE01000004
Actinomycetota
Geodermatophilus poikilotrophus [FOIE]
76882
76957
+
Ala
GGC
[ENA]
¡û
>W1710558786
FOMD01000006
Actinomycetota
Klenkia taihuensis [FOMD]
85967
86042
+
Ala
GGC
[ENA]
¡û
>W1710567621
FOSW01000016
Actinomycetota
Geodermatophilus ruber [FOSW]
30527
30452
-
Ala
GGC
[ENA]
¡û
>W1710571751
FOWE01000002
Actinomycetota
Geodermatophilus obscurus [FOWE]
446163
446238
+
Ala
GGC
[ENA]
¡û
>W1710577749
FPBA01000020
Actinomycetota
Geodermatophilus amargosae [FPBA]
18930
18855
-
Ala
GGC
[ENA]
¡û
>W1710584749
FQVU01000005
Actinomycetota
Jatrophihabitans endophyticus [FQVU]
315874
315949
+
Ala
GGC
[ENA]
¡û
>W1710592808
FRCS01000028
Actinomycetota
Cryptosporangium aurantiacum [FRCS]
3907
3832
-
Ala
GGC
[ENA]
¡û
>W1710593493
FRDM01000035
Actinomycetota
Geodermatophilus obscurus [FRDM]
27107
27182
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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