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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342477 (49 seq.)
>W1710805143
LJZT01000148
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
7511
7582
+
Thr
TGT
[ENA]
¡û
>W1711088520
LSYZ01000080
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
18260
18331
+
Thr
TGT
[ENA]
¡û
>W1711088591
LSZA01000073
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
1333
1262
-
Thr
TGT
[ENA]
¡û
>W1711666600
MRCC01000027
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
17431
17360
-
Thr
TGT
[ENA]
¡û
>W131058594
ANFQ01000125
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
17284
17213
-
Thr
TGT
[ENA]
¡û
>W131166666
ARCP01000047
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
12850
12779
-
Thr
TGT
[ENA]
¡û
>W141038418
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
3060873
3060802
-
Thr
TGT
[ENA]
¡û
>W141067405
ASAK01000005
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
1138392
1138321
-
Thr
TGT
[ENA]
¡û
>W141096718
AVFS01000123
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
28167
28238
+
Thr
TGT
[ENA]
¡û
>W141096756
AVFT01000074
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
11244
11315
+
Thr
TGT
[ENA]
¡û
>W141096787
AVFU01000093
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
42281
42352
+
Thr
TGT
[ENA]
¡û
>W141096825
AVFV01000149
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
875
946
+
Thr
TGT
[ENA]
¡û
>W141096865
AVFW01000128
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
71499
71428
-
Thr
TGT
[ENA]
¡û
>W141096905
AVFX01000097
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
46324
46253
-
Thr
TGT
[ENA]
¡û
>W141096913
AVFY01000014
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
45915
45844
-
Thr
TGT
[ENA]
¡û
>W141096956
AVFZ01000074
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
13770
13699
-
Thr
TGT
[ENA]
¡û
>WENV181234665
OFEU01001044
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1167
1096
-
Thr
TGT
[ENA]
¢þ
>WENV181411240
OGCI01017413
[OGCI] hot springs metagenome; Hot spring water
1052
1123
+
Thr
TGT
[ENA]
¢þ
>W08010760
ABRS01000006
Cyanobacteriota
Coleofasciculus chthonoplastes PCC 7420 [ABRS]
119514
119440
-
Thr
TGT
[ENA]
¡û
>W08011360
ABVE01000006
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
166796
166725
-
Thr
TGT
[ENA]
¡û
>WENV170002196
AGSF01000201
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
11769
11840
+
Thr
TGT
[ENA]
¢þ
>WENV170640180
JFJP01014194
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
6086
6157
+
Thr
TGT
[ENA]
¢þ
>WENV170983292
MWVV01018841
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
885
956
+
Thr
TGT
[ENA]
¢þ
>WENV170991617
MWWA01260763
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
104
175
+
Thr
TGT
[ENA]
¢þ
>WENV170992993
MWWB01149413
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
103
174
+
Thr
TGT
[ENA]
¢þ
>WENV170993088
MWWB01179082
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
126
55
-
Thr
TGT
[ENA]
¢þ
>WENV170993863
MWWC01020297
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
377
306
-
Thr
TGT
[ENA]
¢þ
>WENV170994836
MWWE01065209
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
288
217
-
Thr
TGT
[ENA]
¢þ
>C191000800
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
3829193
3829264
+
Thr
TGT
-
¡û
>W1910175475
BJCD01000042
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
9837
9908
+
Thr
TGT
[ENA]
¡û
>W1910194160
CZCS01000208
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
158131
158060
-
Thr
TGT
[ENA]
¡û
>W1910194199
CZCT02000105
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
3520
3449
-
Thr
TGT
[ENA]
¡û
>W1910194229
CZCU01000111
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
101179
101108
-
Thr
TGT
[ENA]
¡û
>W1910194295
CZCZ01000007
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
644521
644450
-
Thr
TGT
[ENA]
¡û
>W1910194314
CZDF01000148
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
347270
347199
-
Thr
TGT
[ENA]
¡û
>W1910339341
FSSI01000001
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
13435
13506
+
Thr
TGT
[ENA]
¡û
>W1910339388
FSSI02000001
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
13435
13506
+
Thr
TGT
[ENA]
¡û
>W1910812532
MVDI01000001
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
228654
228725
+
Thr
TGT
[ENA]
¡û
>W1911204874
NRIU01002244
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
13970
14041
+
Thr
TGT
[ENA]
¡û
>W1911638406
PVWN01000014
Cyanobacteriota
Chlorogloea sp. CCALA 695 [PVWN]
84677
84606
-
Thr
TGT
[ENA]
¡û
>W1810076218
PEIG01000015
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
36614
36543
-
Thr
TGT
[ENA]
¡û
>C11106720
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
3446442
3446513
+
Thr
TGT
[Ensembl]
¡û
>C11106764
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
3446442
3446513
+
Thr
TGT
[Ensembl]
¡û
>W1511535278
JYON01000002
Cyanobacteriota
Aliterella atlantica CENA595 [JYON]
213347
213418
+
Thr
TGT
[ENA]
¡û
>C131004304
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
1450552
1450623
+
Thr
TGT
[Ensembl]
¡û
>C131004997
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
1943609
1943538
-
Thr
TGT
[Ensembl]
¡û
>W1610669000
LJZT01000148
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
7511
7582
+
Thr
TGT
[ENA]
¡û
>W1610923059
LSYZ01000080
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
18260
18331
+
Thr
TGT
[ENA]
¡û
>W1610923130
LSZA01000073
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
1333
1262
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK