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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342588 (54 seq.)
>W1711705108
MSQD01000009
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
46166
46092
-
Pro
CGG
[ENA]
¡û
>W131051964
AMYG01000017
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
50504
50430
-
Pro
CGG
[ENA]
¡û
>W131167558
ARDJ01000011
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
106024
106098
+
Pro
CGG
[ENA]
¡û
>C025828
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
784901
784975
+
Pro
CGG
[Ensembl]
¡û
>w018990
AATV01000066
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
5369
5445
+
Pro
CGG
[ENA]
¡û
>w010175
AAKQ01000003
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
78006
77930
-
Pro
CGG
[ENA]
¡û
>W141092586
AVAF01000062
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
1797
1723
-
Pro
CGG
[ENA]
¡û
>WENV181226116
OFDK01000058
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
34152
34078
-
Pro
CGG
[ENA]
¢þ
>W141153140
AXDC01000040
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
31521
31595
+
Pro
CGG
[ENA]
¡û
>W141193968
AYSN01000037
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
2344
2270
-
Pro
CGG
[ENA]
¡û
>W141238371
BBKT01000071
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
16322
16248
-
Pro
CGG
[ENA]
¡û
>C08010967
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
2209983
2209912
-
Pro
CGG
[Ensembl]
¡û
>C08011077
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1560508
1560437
-
Pro
CGG
[Ensembl]
¡û
>W141276468
JADV01000004
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
136546
136472
-
Pro
CGG
[ENA]
¡û
>WENV170675669
LDZP01000224
[LDZP] terrestrial metagenome; oil reservoir sample I1
1630
1704
+
Pro
CGG
[ENA]
¢þ
>WENV170676247
LDZR01001856
[LDZR] terrestrial metagenome; oil reservoir sample K2
1293
1367
+
Pro
CGG
[ENA]
¢þ
>C181021912
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
2366080
2366154
+
Pro
CGG
-
¡û
>C191108112
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1350491
1350565
+
Pro
CGG
-
¡û
>W09112131
ABXP01000078
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
14326
14252
-
Pro
CGG
[ENA]
¡û
>W09133552
ACPF01000053
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
15606
15680
+
Pro
CGG
[ENA]
¡û
>W09134137
ACQZ01000016
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
33284
33358
+
Pro
CGG
[ENA]
¡û
>W09135011
ACVG01000032
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
4869
4795
-
Pro
CGG
[ENA]
¡û
>W09135047
ACVH01000016
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
1692
1618
-
Pro
CGG
[ENA]
¡û
>W09135150
ACVK01000009
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
9463
9537
+
Pro
CGG
[ENA]
¡û
>W09135841
ACXP01000003
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
112887
112813
-
Pro
CGG
[ENA]
¡û
>W1910747696
MINB01000004
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
17881
17807
-
Pro
CGG
[ENA]
¡û
>W1910976700
NKHD01000004
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
110480
110406
-
Pro
CGG
[ENA]
¡û
>C151045300
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
777646
777720
+
Pro
CGG
[Ensembl]
¡û
>W10105932
ACXY01000014
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
2588
2514
-
Pro
CGG
[ENA]
¡û
>W10120470
ADXD01000006
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
10846
10772
-
Pro
CGG
[ENA]
¡û
>C10113386
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
809624
809698
+
Pro
CGG
[Ensembl]
¡û
>C10113440
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
831728
831802
+
Pro
CGG
[Ensembl]
¡û
>C10113829
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
1072169
1072243
+
Pro
CGG
[Ensembl]
¡û
>W11108255
ACXY01000014
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
2588
2514
-
Pro
CGG
[ENA]
¡û
>W1511275069
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
112424
112498
+
Pro
CGG
[ENA]
¡û
>C11122504
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1552721
1552647
-
Pro
CGG
[Ensembl]
¡û
>C11122706
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
744359
744433
+
Pro
CGG
[Ensembl]
¡û
>C11123237
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
927883
927957
+
Pro
CGG
[Ensembl]
¡û
>C11123324
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
1726186
1726112
-
Pro
CGG
[Ensembl]
¡û
>W11127079
ADXD01000006
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
10846
10772
-
Pro
CGG
[ENA]
¡û
>W11150417
AEVQ01000001
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
228697
228623
-
Pro
CGG
[ENA]
¡û
>W11152672
AEYS01000015
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
54591
54517
-
Pro
CGG
[ENA]
¡û
>C121007624
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
1580008
1580082
+
Pro
CGG
[Ensembl]
¡û
>W121068122
AJUD01000016
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
55151
55225
+
Pro
CGG
[ENA]
¡û
>W1610043653
BAZY01000017
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
22166
22240
+
Pro
CGG
[ENA]
¡û
>C131001916
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
1006477
1006551
+
Pro
CGG
[Ensembl]
¡û
>W1610612301
LGEO01000061
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
1630
1704
+
Pro
CGG
[ENA]
¡û
>W1610612649
LGEY01000048
Bacillota
Caldanaerobacter subterraneus [LGEY]
1293
1367
+
Pro
CGG
[ENA]
¡û
>W1710040813
BAZY01000017
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
22166
22240
+
Pro
CGG
[ENA]
¡û
>W1710515300
FNBS01000009
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
28121
28047
-
Pro
CGG
[ENA]
¡û
>W1710560364
FONI01000010
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
18602
18676
+
Pro
CGG
[ENA]
¡û
>W1710583324
FQUR01000016
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
37208
37134
-
Pro
CGG
[ENA]
¡û
>W1710733807
LGEO01000061
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
1630
1704
+
Pro
CGG
[ENA]
¡û
>W1710733970
LGEY01000048
Bacillota
Caldanaerobacter subterraneus [LGEY]
1293
1367
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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