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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342590 (40 seq.)
>W131052013
AMYG01000069
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
374
448
+
Thr
CGT
[ENA]
¡û
>W131167590
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
96072
95998
-
Thr
CGT
[ENA]
¡û
>w018999
AATV01000070
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
5717
5791
+
Thr
CGT
[ENA]
¡û
>w010170
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
178394
178323
-
Thr
CGT
[ENA]
¡û
>W141092595
AVAF01000098
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
17069
16995
-
Thr
CGT
[ENA]
¡û
>WENV181226273
OFDK01000516
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
83
157
+
Thr
CGT
[ENA]
¢þ
>WENV181404280
OGBZ01009760
[OGBZ] sediment metagenome; hot spring sediment
409
483
+
Thr
CGT
[ENA]
¢þ
>C08010956
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
929950
930024
+
Thr
CGT
[Ensembl]
¡û
>C08011042
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
444341
444415
+
Thr
CGT
[Ensembl]
¡û
>W141276503
JADV01000026
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
715
789
+
Thr
CGT
[ENA]
¡û
>WENV170675627
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229104
229030
-
Thr
CGT
[ENA]
¢þ
>WENV170676895
LDZS01003104
[LDZS] terrestrial metagenome; oil reservoir sample K3
209
283
+
Thr
CGT
[ENA]
¢þ
>W09133563
ACPF01000148
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
379
453
+
Thr
CGT
[ENA]
¡û
>W09134157
ACQZ01000051
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
9078
9004
-
Thr
CGT
[ENA]
¡û
>W09135073
ACVH01000067
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
409
483
+
Thr
CGT
[ENA]
¡û
>W09135173
ACVK01000035
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
21606
21532
-
Thr
CGT
[ENA]
¡û
>W09135881
ACXP01000031
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
468
542
+
Thr
CGT
[ENA]
¡û
>C191108126
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2739725
2739651
-
Thr
CGT
-
¡û
>C151045320
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1939428
1939354
-
Thr
CGT
[Ensembl]
¡û
>W10105958
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
526
600
+
Thr
CGT
[ENA]
¡û
>W10120520
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
894
968
+
Thr
CGT
[ENA]
¡û
>C10113402
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1986803
1986729
-
Thr
CGT
[Ensembl]
¡û
>C10113458
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1919413
1919339
-
Thr
CGT
[Ensembl]
¡û
>W11108281
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
526
600
+
Thr
CGT
[ENA]
¡û
>W1511275081
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
1472726
1472652
-
Thr
CGT
[ENA]
¡û
>C11122469
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
439757
439831
+
Thr
CGT
[Ensembl]
¡û
>C11122731
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1984431
1984357
-
Thr
CGT
[Ensembl]
¡û
>C11123255
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2270014
2269940
-
Thr
CGT
[Ensembl]
¡û
>W11127129
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
894
968
+
Thr
CGT
[ENA]
¡û
>W11152671
AEYS01000014
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
25178
25104
-
Thr
CGT
[ENA]
¡û
>W1610043686
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
378
452
+
Thr
CGT
[ENA]
¡û
>W121068082
AJUD01000005
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
123268
123194
-
Thr
CGT
[ENA]
¡û
>W1610612259
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229104
229030
-
Thr
CGT
[ENA]
¡û
>W1610613191
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
209
283
+
Thr
CGT
[ENA]
¡û
>W1710040846
BAZY01000047
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
378
452
+
Thr
CGT
[ENA]
¡û
>W1710515314
FNBS01000018
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
7809
7735
-
Thr
CGT
[ENA]
¡û
>W1710560361
FONI01000007
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
724
798
+
Thr
CGT
[ENA]
¡û
>W1710583294
FQUR01000009
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
218086
218012
-
Thr
CGT
[ENA]
¡û
>W1710733765
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229104
229030
-
Thr
CGT
[ENA]
¡û
>W1710734398
LGFN01000208
Bacillota
Caldanaerobacter subterraneus [LGFN]
209
283
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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