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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342675 (70 seq.)
>W1710891416
LNCU01000088
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
125699
125773
+
Gln
TTG
[ENA]
¡û
>W1712049611
NFUH01000218
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
11848
11922
+
Gln
TTG
[ENA]
¡û
>C171021115
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
7309685
7309611
-
Gln
TTG
-
¡û
>C171032876
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
2634494
2634568
+
Gln
TTG
-
¡û
>C171032936
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
2306595
2306669
+
Gln
TTG
-
¡û
>C171033045
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
2936677
2936603
-
Gln
TTG
-
¡û
>C171033146
CP014692
Alphaproteobacteria
Acetobacter aceti TMW2.1153 [CP014692]
2753140
2753214
+
Gln
TTG
-
¡û
>C000482
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
829736
829810
+
Gln
TTG
[Ensembl]
¡û
>W131164866
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
1045119
1045193
+
Gln
TTG
[ENA]
¡û
>C010071
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
1240835
1240761
-
Gln
TTG
[Ensembl]
¡û
>W141041854
AMCQ01000973
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
545
471
-
Gln
TTG
[ENA]
¡û
>W141082081
ATSX01000003
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
27403
27477
+
Gln
TTG
[ENA]
¡û
>WENV181166760
OEIU01001698
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
8304
8230
-
Gln
TTG
[ENA]
¢þ
>WENV181166841
OEIU01003135
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
7962
8036
+
Gln
TTG
[ENA]
¢þ
>WENV181166919
OEIU01004142
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6733
6659
-
Gln
TTG
[ENA]
¢þ
>WENV181168196
OEIU01199922
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
75
1
-
Gln
TTG
[ENA]
¢þ
>W141195262
AYTY01000117
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
49193
49119
-
Gln
TTG
[ENA]
¡û
>W141222896
BACU01000410
Alphaproteobacteria
Azospirillum sp. B4 [BACU]
7057
6983
-
Gln
TTG
[ENA]
¡û
>W141227260
BAKW01000005
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
157556
157482
-
Gln
TTG
[ENA]
¡û
>WENV170706124
LNAP01001234
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
12247
12321
+
Gln
TTG
[ENA]
¢þ
>WENV170709955
LNFM01000979
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11780
11854
+
Gln
TTG
[ENA]
¢þ
>WENV170710502
LNFM01001904
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
70877
70803
-
Gln
TTG
[ENA]
¢þ
>W141462242
JFHO01000032
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
40995
41069
+
Gln
TTG
[ENA]
¡û
>C181058298
CP022110
Alphaproteobacteria
Nitrospirillum amazonense CBAmc CBAmC [CP022110, CP022111, CP022112, CP022113]
2246279
2246205
-
Gln
TTG
-
¡û
>C181221219
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
1240843
1240769
-
Gln
TTG
-
¡û
>C191071735
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
5354424
5354350
-
Gln
TTG
-
¡û
>C191100524
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
234952
234878
-
Gln
TTG
-
¡û
>C191157826
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
1040322
1040248
-
Gln
TTG
-
¡û
>C191171964
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
3405838
3405764
-
Gln
TTG
-
¡û
>C191186624
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
608982
609056
+
Gln
TTG
-
¡û
>W09105145
AAOO01000058
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
7436
7510
+
Gln
TTG
[ENA]
¡û
>W141726122
JNAB01000058
Alphaproteobacteria
Kozakia baliensis [JNAB]
54612
54538
-
Gln
TTG
[ENA]
¡û
>W141803709
JPGX01000147
Alphaproteobacteria
Nitrospirillum amazonense CBAmc [JPGX]
6043
5969
-
Gln
TTG
[ENA]
¡û
>W1910006516
BAGS01000004
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
87086
87160
+
Gln
TTG
[ENA]
¡û
>W1910181396
BJLY01000003
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
20283
20357
+
Gln
TTG
[ENA]
¡û
>W1910181883
BJMK01000016
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
20685
20759
+
Gln
TTG
[ENA]
¡û
>W1910183166
BJNM01000006
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
21798
21872
+
Gln
TTG
[ENA]
¡û
>W1911629525
PSRR01000471
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
2055
2129
+
Gln
TTG
[ENA]
¡û
>W1810000560
BEWK01000019
Alphaproteobacteria
Acetobacter aceti NBRC 3281 [BEWK]
36769
36843
+
Gln
TTG
[ENA]
¡û
>W1810000813
BEWP01000013
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
26931
26857
-
Gln
TTG
[ENA]
¡û
>W1810604045
QGLT01000006
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
24696
24622
-
Gln
TTG
[ENA]
¡û
>C151006209
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
1358140
1358066
-
Gln
TTG
[Ensembl]
¡û
>C151066550
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
7394722
7394648
-
Gln
TTG
[Ensembl]
¡û
>C11100975
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
1276300
1276226
-
Gln
TTG
[Ensembl]
¡û
>W1510973743
JGCL01000014
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
187172
187246
+
Gln
TTG
[ENA]
¡û
>W11157263
AFBX01000231
Alphaproteobacteria
Nitrospirillum amazonense Y2 [AFBX]
253
327
+
Gln
TTG
[ENA]
¡û
>W11179027
AGFR01000012
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
23500
23574
+
Gln
TTG
[ENA]
¡û
>W11184450
BABW01000061
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
5777
5851
+
Gln
TTG
[ENA]
¡û
>W121016337
AGQV01000006
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
138684
138610
-
Gln
TTG
[ENA]
¡û
>W1610040645
BALE01000003
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
12936
12862
-
Gln
TTG
[ENA]
¡û
>W1610040691
BAMU01000006
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
205618
205544
-
Gln
TTG
[ENA]
¡û
>C131000831
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
6087213
6087139
-
Gln
TTG
[Ensembl]
¡û
>W1610623993
LHZB01000103
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
25713
25639
-
Gln
TTG
[ENA]
¡û
>W1610624112
LHZD01000008
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
21824
21898
+
Gln
TTG
[ENA]
¡û
>W1610624160
LHZE01000056
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
21838
21912
+
Gln
TTG
[ENA]
¡û
>W1610624257
LHZG01000154
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
7432
7358
-
Gln
TTG
[ENA]
¡û
>W1610624659
LHZP01000014
Alphaproteobacteria
Gluconobacter roseus [LHZP]
20315
20389
+
Gln
TTG
[ENA]
¡û
>W1610624753
LHZR01000098
Alphaproteobacteria
Gluconobacter albidus [LHZR]
18651
18725
+
Gln
TTG
[ENA]
¡û
>W1610751781
LNCU01000088
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
125699
125773
+
Gln
TTG
[ENA]
¡û
>W1710037843
BALE01000003
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
12936
12862
-
Gln
TTG
[ENA]
¡û
>W1710037889
BAMU01000006
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
205618
205544
-
Gln
TTG
[ENA]
¡û
>W1710513075
FMZW01000081
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
2476
2550
+
Gln
TTG
[ENA]
¡û
>W1710624610
JOPB01000023
Alphaproteobacteria
Commensalibacter intestini [JOPB]
63569
63495
-
Gln
TTG
[ENA]
¡û
>W1710735642
LGHL01000085
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
80743
80817
+
Gln
TTG
[ENA]
¡û
>W1710755111
LHZB01000103
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
25713
25639
-
Gln
TTG
[ENA]
¡û
>W1710755230
LHZD01000008
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
21824
21898
+
Gln
TTG
[ENA]
¡û
>W1710755278
LHZE01000056
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
21838
21912
+
Gln
TTG
[ENA]
¡û
>W1710755375
LHZG01000154
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
7432
7358
-
Gln
TTG
[ENA]
¡û
>W1710755777
LHZP01000014
Alphaproteobacteria
Gluconobacter roseus [LHZP]
20315
20389
+
Gln
TTG
[ENA]
¡û
>W1710755871
LHZR01000098
Alphaproteobacteria
Gluconobacter albidus [LHZR]
18651
18725
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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