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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342732 (77 seq.)
>W1711009539
LQQT01000034
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
183920
183994
+
Gly
CCC
[ENA]
¡û
>W1711129938
LUUM01000090
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
72618
72692
+
Gly
CCC
[ENA]
¡û
>W1711228869
LXWX01000122
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
36101
36175
+
Gly
CCC
[ENA]
¡û
>W1711573734
MNDV01000095
Alphaproteobacteria
Alphaproteobacteria bacterium 13_2_20CM_2_64_7 [MNDV]
10914
10988
+
Gly
CCC
[ENA]
¡û
>C171072651
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
534168
534242
+
Gly
CCC
-
¡û
>W131163853
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
916648
916574
-
Gly
CCC
[ENA]
¡û
>w015395
AAPC01000002
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
206159
206233
+
Gly
CCC
[ENA]
¡û
>WENV180015417
FQKF010643626
[FQKF] soil metagenome; Soil
113
187
+
Gly
CCC
[ENA]
¢þ
>WENV180292553
OBIV01505346
[OBIV] soil metagenome; Clay
103
29
-
Gly
CCC
[ENA]
¢þ
>WENV180344365
OBLK01364809
[OBLK] soil metagenome; Clay
101
175
+
Gly
CCC
[ENA]
¢þ
>WENV181163623
OEIQ01127882
[OEIQ] soil metagenome; soil
119
45
-
Gly
CCC
[ENA]
¢þ
>WENV181165107
OEIR01587554
[OEIR] soil metagenome; soil
52
126
+
Gly
CCC
[ENA]
¢þ
>WENV181165460
OEIS01001678
[OEIS] soil metagenome; soil
68
142
+
Gly
CCC
[ENA]
¢þ
>WENV181167482
OEIU01034288
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1380
1454
+
Gly
CCC
[ENA]
¢þ
>WENV181168937
OEIV010000028
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
17022
17096
+
Gly
CCC
[ENA]
¢þ
>WENV181169116
OEIV010000306
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
26533
26459
-
Gly
CCC
[ENA]
¢þ
>WENV181190067
OEOF01448078
[OEOF] activated sludge metagenome; Activated Sludge
76
150
+
Gly
CCC
[ENA]
¢þ
>WENV181308000
OFIS01000092
[OFIS] sludge metagenome; sludge
109836
109762
-
Gly
CCC
[ENA]
¢þ
>WENV181311949
OFJB01025298
[OFJB] sludge metagenome; sludge
1222
1148
-
Gly
CCC
[ENA]
¢þ
>WENV181402179
OFTY01000193
[OFTY] sludge metagenome; sludge
4915
4989
+
Gly
CCC
[ENA]
¢þ
>WENV181416117
OGCL01053076
[OGCL] hot springs metagenome; Hot spring water
13
87
+
Gly
CCC
[ENA]
¢þ
>W141151370
AXBA01000005
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
208884
208958
+
Gly
CCC
[ENA]
¡û
>W141216022
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
1885892
1885966
+
Gly
CCC
[ENA]
¡û
>C08011438
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
2568867
2568941
+
Gly
CCC
[Ensembl]
¡û
>C08000342
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
260304
260233
-
Gly
CCC
[Ensembl]
¡û
>W141278487
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
4361091
4361165
+
Gly
CCC
[ENA]
¡û
>WENV183724998
PJQE01119858
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
323
249
-
Gly
CCC
[ENA]
¢þ
>WENV170000028
AERA01001633
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
9753
9679
-
Gly
CCC
[ENA]
¢þ
>WENV170012066
APMI01116355
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
63
137
+
Gly
CCC
[ENA]
¢þ
>WENV170012108
APMI01121074
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1353
1427
+
Gly
CCC
[ENA]
¢þ
>WENV170553605
CXWK01025107
[CXWK] wastewater metagenome; activated sludge
6200
6274
+
Gly
CCC
[ENA]
¢þ
>WENV170554223
CXWK01054639
[CXWK] wastewater metagenome; activated sludge
4536
4610
+
Gly
CCC
[ENA]
¢þ
>WENV170566394
FKKE01022383
[FKKE] freshwater metagenome; freshwater
2743
2669
-
Gly
CCC
[ENA]
¢þ
>WENV170566428
FKKE01026996
[FKKE] freshwater metagenome; freshwater
494
568
+
Gly
CCC
[ENA]
¢þ
>WENV170649345
JRYC01001649
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
414
488
+
Gly
CCC
[ENA]
¢þ
>WENV170652194
JRYH01000028
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
7560
7486
-
Gly
CCC
[ENA]
¢þ
>WENV170652306
JRYH01000678
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
87694
87768
+
Gly
CCC
[ENA]
¢þ
>WENV170655146
JTFN01007941
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2908
2834
-
Gly
CCC
[ENA]
¢þ
>WENV170974891
MTKY01079957
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1342
1416
+
Gly
CCC
[ENA]
¢þ
>WENV170974966
MTKY01082882
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2836
2910
+
Gly
CCC
[ENA]
¢þ
>WENV171003331
NNBT01005022
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
3181
3255
+
Gly
CCC
[ENA]
¢þ
>C181089653
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
1532513
1532439
-
Gly
CCC
-
¡û
>W141701385
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
191971
192045
+
Gly
CCC
[ENA]
¡û
>W141730047
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
758576
758650
+
Gly
CCC
[ENA]
¡û
>W141821188
JQNK01000002
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
212432
212506
+
Gly
CCC
[ENA]
¡û
>W1910236485
FPHO01000003
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
2129742
2129816
+
Gly
CCC
[ENA]
¡û
>W1911148307
NPET01000004
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
69037
69111
+
Gly
CCC
[ENA]
¡û
>W1911148370
NPEU01000183
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
4344
4270
-
Gly
CCC
[ENA]
¡û
>W1911148483
NPEW01000548
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
810
884
+
Gly
CCC
[ENA]
¡û
>W1911148514
NPEX01000159
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
9563
9637
+
Gly
CCC
[ENA]
¡û
>W1911219110
NRRJ01000014
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
69176
69250
+
Gly
CCC
[ENA]
¡û
>W1911497402
OCNJ01000008
Alphaproteobacteria
Caenispirillum bisanense USBA 140 [OCNJ]
310098
310172
+
Gly
CCC
[ENA]
¡û
>W1911705894
QORU01000012
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
261725
261651
-
Gly
CCC
[ENA]
¡û
>W1911708676
QOZQ01000005
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60012 [QOZQ]
412700
412774
+
Gly
CCC
[ENA]
¡û
>W1810330558
PUIV01000006
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
14038
14112
+
Gly
CCC
[ENA]
¡û
>W1810368577
PVZS01000002
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
117044
116970
-
Gly
CCC
[ENA]
¡û
>SRA1005326
SRR006907.178866
metagenomic water samples (SRP000427)
71
145
+
Gly
CCC
[SRA]
>W1810682799
QKVK01000005
Alphaproteobacteria
Aestuariivirga litoralis KCTC 52945 [QKVK]
270633
270559
-
Gly
CCC
[ENA]
¡û
>C151094733
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
1991217
1991291
+
Gly
CCC
-
¡û
>SRA1049965
SRR035095.169774
454 Sequencing (SRP001816)
31
105
+
Gly
CCC
[SRA]
>W10118835
ADVE01000032
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
36139
36213
+
Gly
CCC
[ENA]
¡û
>WENV11100386
AERA01001633
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
9753
9679
-
Gly
CCC
[ENA]
¡û
>W1510741131
CYHC01000006
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
127494
127420
-
Gly
CCC
[ENA]
¡û
>W11125007
ADVE01000032
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
36139
36213
+
Gly
CCC
[ENA]
¡û
>W11150225
AEVM01000005
Alphaproteobacteria
Methylocystis sp. ATCC 49242 [AEVM]
178142
178216
+
Gly
CCC
[ENA]
¡û
>W121110803
ALIQ01000212
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
30219
30293
+
Gly
CCC
[ENA]
¡û
>W121068004
AJTV01000052
Alphaproteobacteria
Methylocystis parvus OBBP [AJTV]
20264
20338
+
Gly
CCC
[ENA]
¡û
>W121103209
AKZI01000030
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
46089
46163
+
Gly
CCC
[ENA]
¡û
>W1610631765
LIOL01000006
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
127494
127420
-
Gly
CCC
[ENA]
¡û
>W1610858059
LQQT01000034
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
183920
183994
+
Gly
CCC
[ENA]
¡û
>W1610941011
LUUM01000090
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
72618
72692
+
Gly
CCC
[ENA]
¡û
>WENV077423
AAFX01036318
Soil microbial communities from Minnesota Farm
693
617
-
Gly
CCC
[ENA]
>W1611012786
LXWX01000122
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
36101
36175
+
Gly
CCC
[ENA]
¡û
>W1710515549
FNBW01000008
Alphaproteobacteria
Thalassobaculum litoreum DSM 18839 [FNBW]
98005
98079
+
Gly
CCC
[ENA]
¡û
>W1710593773
FRXO01000003
Alphaproteobacteria
Pseudoxanthobacter soli DSM 19599 [FRXO]
583299
583373
+
Gly
CCC
[ENA]
¡û
>W1710609871
FYDG01000012
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
69144
69218
+
Gly
CCC
[ENA]
¡û
>W1710764650
LIOL01000006
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
127494
127420
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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