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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342807 (53 seq.)
>WENV000980
AACY020030121
Marine microbial communities from Global Ocean Sampling (GOS)
815
889
+
Gly
GCC
[ENA]
>W1711352943
MDDP01000010
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
479653
479581
-
Gly
GCC
[ENA]
¡û
>C171036274
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
2289647
2289575
-
Gly
GCC
-
¡û
>WENV180102747
OAOZ01009538
[OAOZ] marine metagenome; ENVO:00002010
376
304
-
Gly
GCC
[ENA]
¢þ
>WENV180115221
OAPS01171150
[OAPS] marine metagenome; sea water
108
34
-
Gly
GCC
[ENA]
¢þ
>WENV180367446
OBOE01093729
[OBOE] marine metagenome; ENVO:00002010
223
297
+
Gly
GCC
[ENA]
¢þ
>WENV180376811
OBOM01100850
[OBOM] marine metagenome; Seawater
160
234
+
Gly
GCC
[ENA]
¢þ
>WENV180390874
OBPL01064214
[OBPL] marine metagenome; Sterivex filter
330
258
-
Gly
GCC
[ENA]
¢þ
>WENV180392217
OBPO01022383
[OBPO] marine metagenome; seawater
406
478
+
Gly
GCC
[ENA]
¢þ
>WENV180395642
OBPT01060630
[OBPT] marine metagenome; ENVO:00002010 seawater
325
251
-
Gly
GCC
[ENA]
¢þ
>WENV180396287
OBPU01100230
[OBPU] marine metagenome; ENVO:00002010
111
185
+
Gly
GCC
[ENA]
¢þ
>WENV180396452
OBPV01005204
[OBPV] marine metagenome; ENVO:00002010
863
937
+
Gly
GCC
[ENA]
¢þ
>WENV180593611
OCOX01104214
[OCOX] marine metagenome; ENVO:00002010
92
166
+
Gly
GCC
[ENA]
¢þ
>WENV180594163
OCOY01072304
[OCOY] marine metagenome; ENVO:00002010
361
287
-
Gly
GCC
[ENA]
¢þ
>WENV180650368
OCSY01012937
[OCSY] marine metagenome; 30 L Plastic container
191
117
-
Gly
GCC
[ENA]
¢þ
>W141067182
ARZX01000001
Bacteroidota
Cellulophaga geojensis KL-A [ARZX]
335210
335282
+
Gly
GCC
[ENA]
¡û
>W141079139
ATLG01000025
Bacteroidota
Cellulophaga baltica 4 [ATLG]
288996
289068
+
Gly
GCC
[ENA]
¡û
>W141079177
ATLH01000029
Bacteroidota
Cellulophaga baltica 13 [ATLH]
178073
178145
+
Gly
GCC
[ENA]
¡û
>W141079212
ATLI01000026
Bacteroidota
Cellulophaga baltica 18 [ATLI]
182603
182675
+
Gly
GCC
[ENA]
¡û
>W141079245
ATLJ01000034
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
116730
116802
+
Gly
GCC
[ENA]
¡û
>WENV181126276
OEFV01034378
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
242
168
-
Gly
GCC
[ENA]
¢þ
>WENV182551416
OJCC01007313
[OJCC] seawater metagenome; Sea water
499
427
-
Gly
GCC
[ENA]
¢þ
>WENV182552831
OJCQ01000996
[OJCQ] seawater metagenome; Sea water
2135
2207
+
Gly
GCC
[ENA]
¢þ
>WENV182559319
OJDO01016095
[OJDO] seawater metagenome; Sea water
353
281
-
Gly
GCC
[ENA]
¢þ
>WENV182565284
OJEH01001522
[OJEH] seawater metagenome; Sea water
2662
2734
+
Gly
GCC
[ENA]
¢þ
>WENV182575395
OJFU01012796
[OJFU] seawater metagenome; Sea water
195
123
-
Gly
GCC
[ENA]
¢þ
>WENV182581591
OJGX01016558
[OJGX] seawater metagenome; Sea water
1245
1171
-
Gly
GCC
[ENA]
¢þ
>WENV182586245
OJHK01000011
[OJHK] seawater metagenome; Sea water
223468
223542
+
Gly
GCC
[ENA]
¢þ
>WENV182589465
OJID01004820
[OJID] seawater metagenome; Sea water
124
196
+
Gly
GCC
[ENA]
¢þ
>WENV170024201
BCQL01029938
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
354
426
+
Gly
GCC
[ENA]
¢þ
>WENV170274329
CERM01010477
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
388
460
+
Gly
GCC
[ENA]
¢þ
>WENV170325655
CEST01038320
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
983
911
-
Gly
GCC
[ENA]
¢þ
>WENV170569823
FLMP01317900
[FLMP] seawater metagenome; seawater
368
296
-
Gly
GCC
[ENA]
¢þ
>C191127746
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
2179539
2179611
+
Gly
GCC
-
¡û
>C191182100
CP040710
Bacteroidota
Aggregatimonas sangjinii F202Z8 [CP040710]
3312302
3312374
+
Gly
GCC
-
¡û
>W141562339
JHZC01000002
Bacteroidota
Maribacter antarcticus DSM 21422 [JHZC]
48352
48278
-
Gly
GCC
[ENA]
¡û
>W09110742
ABVW01000002
Bacteroidota
Flavobacteria bacterium MS024-3C [ABVW]
4999
4925
-
Gly
GCC
[ENA]
¡û
>WENV024386
AACY020802575
Marine microbial communities from Global Ocean Sampling (GOS)
55
129
+
Gly
GCC
[ENA]
>W1910545615
FZLT01000045
Bacteroidota
Cellulophaga lytica [FZLT]
31772
31700
-
Gly
GCC
[ENA]
¡û
>W1910693627
MDGN01000034
Bacteroidota
Maribacter sp. 4U21 [MDGN]
165215
165287
+
Gly
GCC
[ENA]
¡û
>W1810121567
PHUL01000001
Bacteroidota
Algibacter sp. RHA_19 [PHUL]
239954
240026
+
Gly
GCC
[ENA]
¡û
>C151046355
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
2121495
2121423
-
Gly
GCC
[Ensembl]
¡û
>C151061212
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
1841980
1841908
-
Gly
GCC
[Ensembl]
¡û
>C151062887
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
1862798
1862726
-
Gly
GCC
[Ensembl]
¡û
>C11104729
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
2421735
2421663
-
Gly
GCC
[Ensembl]
¡û
>C11105686
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
2163099
2163027
-
Gly
GCC
[Ensembl]
¡û
>W1511320911
JQCT01000001
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
176514
176586
+
Gly
GCC
[ENA]
¡û
>W1511433245
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
3295698
3295624
-
Gly
GCC
[ENA]
¡û
>W1610626571
LICK01000010
Bacteroidota
Polaribacter sp. BACL8 MAG-120531-bin13 [LICK]
42438
42512
+
Gly
GCC
[ENA]
¡û
>W1710514671
FNBD01000001
Bacteroidota
Cellulophaga baltica [FNBD]
180351
180423
+
Gly
GCC
[ENA]
¡û
>W1710579954
FPIY01000002
Bacteroidota
Cellulophaga fucicola [FPIY]
557583
557655
+
Gly
GCC
[ENA]
¡û
>W1710606125
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
280807
280879
+
Gly
GCC
[ENA]
¡û
>W1710757698
LICK01000010
Bacteroidota
Polaribacter sp. BACL8 MAG-120531-bin13 [LICK]
42438
42512
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK