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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342858 (81 seq.)
>W131111614
APME01000081
Gammaproteobacteria
Pseudoalteromonas agarivorans S816 [APME]
56
130
+
Gln
TTG
[ENA]
¡û
>W131111616
APME01000081
Gammaproteobacteria
Pseudoalteromonas agarivorans S816 [APME]
378
452
+
Gln
TTG
[ENA]
¡û
>W131111617
APME01000082
Gammaproteobacteria
Pseudoalteromonas agarivorans S816 [APME]
649
575
-
Gln
TTG
[ENA]
¡û
>W131111620
APME01000082
Gammaproteobacteria
Pseudoalteromonas agarivorans S816 [APME]
273
199
-
Gln
TTG
[ENA]
¡û
>w028551
ABDD01000024
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
76234
76158
-
Gln
TTG
[ENA]
¡û
>w028549
ABDD01000024
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
76523
76447
-
Gln
TTG
[ENA]
¡û
>C08010583
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4221047
4220976
-
Gln
TTG
[Ensembl]
¡û
>C08010585
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4220758
4220687
-
Gln
TTG
[Ensembl]
¡û
>W141236573
BBIN01000039
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 412' [BBIN]
67859
67785
-
Gln
TTG
[ENA]
¡û
>W141236603
BBIN01000122
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 412' [BBIN]
191
117
-
Gln
TTG
[ENA]
¡û
>W141236604
BBIN01000123
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 412' [BBIN]
85
11
-
Gln
TTG
[ENA]
¡û
>W141236605
BBIN01000124
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 412' [BBIN]
102
28
-
Gln
TTG
[ENA]
¡û
>W141236606
BBIN01000125
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 412' [BBIN]
353
279
-
Gln
TTG
[ENA]
¡û
>W141236637
BBIN01000211
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 412' [BBIN]
11230
11304
+
Gln
TTG
[ENA]
¡û
>WENV182543782
OJBC01010501
[OJBC] seawater metagenome; Sea water
432
358
-
Gln
TTG
[ENA]
¢þ
>WENV182543784
OJBC01010501
[OJBC] seawater metagenome; Sea water
167
93
-
Gln
TTG
[ENA]
¢þ
>WENV182544695
OJBJ01000006
[OJBJ] seawater metagenome; Sea water
38676
38750
+
Gln
TTG
[ENA]
¢þ
>WENV182556857
OJDH01000346
[OJDH] seawater metagenome; Sea water
149
75
-
Gln
TTG
[ENA]
¢þ
>WENV182577050
OJGC01001083
[OJGC] seawater metagenome; Sea water
5149
5075
-
Gln
TTG
[ENA]
¢þ
>WENV182577052
OJGC01001083
[OJGC] seawater metagenome; Sea water
4911
4837
-
Gln
TTG
[ENA]
¢þ
>WENV182594427
OJIV01009880
[OJIV] seawater metagenome; Sea water
1309
1235
-
Gln
TTG
[ENA]
¢þ
>C08010776
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4496798
4496727
-
Gln
TTG
[Ensembl]
¡û
>C08010779
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4496368
4496297
-
Gln
TTG
[Ensembl]
¡û
>C08010781
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4496087
4496016
-
Gln
TTG
[Ensembl]
¡û
>C08010783
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4495795
4495724
-
Gln
TTG
[Ensembl]
¡û
>WENV170022235
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2332
2406
+
Gln
TTG
[ENA]
¢þ
>WENV170022236
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2430
2504
+
Gln
TTG
[ENA]
¢þ
>C181010098
CP011011
Gammaproteobacteria
Pseudoalteromonas agarivorans DSM 14585 [CP011011, CP011012]
1255522
1255448
-
Gln
TTG
-
¡û
>C181010101
CP011011
Gammaproteobacteria
Pseudoalteromonas agarivorans DSM 14585 [CP011011, CP011012]
1255148
1255074
-
Gln
TTG
-
¡û
>C181010103
CP011011
Gammaproteobacteria
Pseudoalteromonas agarivorans DSM 14585 [CP011011, CP011012]
1254825
1254751
-
Gln
TTG
-
¡û
>C181010105
CP011011
Gammaproteobacteria
Pseudoalteromonas agarivorans DSM 14585 [CP011011, CP011012]
1254503
1254429
-
Gln
TTG
-
¡û
>C181214200
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3868369
3868295
-
Gln
TTG
-
¡û
>C191148762
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1429070
1428996
-
Gln
TTG
-
¡û
>C191148766
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1428600
1428526
-
Gln
TTG
-
¡û
>C09109828
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
4115944
4115870
-
Gln
TTG
[Ensembl]
¡û
>C09109831
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
4115526
4115452
-
Gln
TTG
[Ensembl]
¡û
>C09109833
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
4115236
4115162
-
Gln
TTG
[Ensembl]
¡û
>W1911179055
NQMR01000042
Gammaproteobacteria
Pseudoalteromonas sp. NBT06-2 [NQMR]
60643
60717
+
Gln
TTG
[ENA]
¡û
>W1911179073
NQMR01000079
Gammaproteobacteria
Pseudoalteromonas sp. NBT06-2 [NQMR]
156
230
+
Gln
TTG
[ENA]
¡û
>W1911179115
NQMR01000208
Gammaproteobacteria
Pseudoalteromonas sp. NBT06-2 [NQMR]
1027
953
-
Gln
TTG
[ENA]
¡û
>W1911710052
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
209379
209305
-
Gln
TTG
[ENA]
¡û
>W1911710056
QPQT01000008
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
208815
208741
-
Gln
TTG
[ENA]
¡û
>W1911812292
QZEI01000001
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
200844
200770
-
Gln
TTG
[ENA]
¡û
>W1911812293
QZEI01000001
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
200742
200668
-
Gln
TTG
[ENA]
¡û
>W1911812296
QZEI01000001
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
200424
200350
-
Gln
TTG
[ENA]
¡û
>W1810155902
PJAZ01000049
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
30150
30224
+
Gln
TTG
[ENA]
¡û
>W1810155905
PJAZ01000049
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
30642
30716
+
Gln
TTG
[ENA]
¡û
>W1810155907
PJAZ01000049
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
30926
31000
+
Gln
TTG
[ENA]
¡û
>W1810156219
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
30150
30224
+
Gln
TTG
[ENA]
¡û
>W1810156222
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
30642
30716
+
Gln
TTG
[ENA]
¡û
>W1810156224
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
30926
31000
+
Gln
TTG
[ENA]
¡û
>W1810156688
PJBL01000016
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
198910
198836
-
Gln
TTG
[ENA]
¡û
>W1810156691
PJBL01000016
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
198418
198344
-
Gln
TTG
[ENA]
¡û
>W1810156693
PJBL01000016
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
198134
198060
-
Gln
TTG
[ENA]
¡û
>W1810156790
PJBM01000256
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
29349
29423
+
Gln
TTG
[ENA]
¡û
>W1810156793
PJBM01000256
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
29841
29915
+
Gln
TTG
[ENA]
¡û
>W1810156795
PJBM01000256
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
30125
30199
+
Gln
TTG
[ENA]
¡û
>W1510021545
BBZB01000001
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 423' [BBZB]
3029470
3029544
+
Gln
TTG
[ENA]
¡û
>W1510021548
BBZB01000001
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 423' [BBZB]
3029845
3029919
+
Gln
TTG
[ENA]
¡û
>W1510021550
BBZB01000001
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 423' [BBZB]
3030086
3030160
+
Gln
TTG
[ENA]
¡û
>W1510021552
BBZB01000001
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 423' [BBZB]
3030326
3030400
+
Gln
TTG
[ENA]
¡û
>W1510021578
BBZB01000001
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 423' [BBZB]
2450457
2450383
-
Gln
TTG
[ENA]
¡û
>W1510021585
BBZB01000001
Gammaproteobacteria
Pseudoalteromonas sp. '520P1 No. 423' [BBZB]
2011913
2011839
-
Gln
TTG
[ENA]
¡û
>W1511366743
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
26516
26590
+
Gln
TTG
[ENA]
¡û
>W1511366744
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
26616
26690
+
Gln
TTG
[ENA]
¡û
>W1511366747
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
27011
27085
+
Gln
TTG
[ENA]
¡û
>W1511366750
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
27450
27524
+
Gln
TTG
[ENA]
¡û
>W1511366752
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
27710
27784
+
Gln
TTG
[ENA]
¡û
>W1511586728
LAZL01000016
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
111116
111190
+
Gln
TTG
[ENA]
¡û
>W1511586729
LAZL01000016
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
111222
111296
+
Gln
TTG
[ENA]
¡û
>W1610460581
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413671
413597
-
Gln
TTG
[ENA]
¡û
>W1610460584
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413238
413164
-
Gln
TTG
[ENA]
¡û
>W1610460586
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
412957
412883
-
Gln
TTG
[ENA]
¡û
>W1610460588
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
412612
412538
-
Gln
TTG
[ENA]
¡û
>W1710460145
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413671
413597
-
Gln
TTG
[ENA]
¡û
>W1710460148
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
413238
413164
-
Gln
TTG
[ENA]
¡û
>W1710460150
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
412957
412883
-
Gln
TTG
[ENA]
¡û
>W1710460152
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
412612
412538
-
Gln
TTG
[ENA]
¡û
>W1710558071
FOLO01000013
Gammaproteobacteria
Pseudoalteromonas denitrificans DSM 6059 [FOLO]
44481
44407
-
Gln
TTG
[ENA]
¡û
>W1710558106
FOLO01000068
Gammaproteobacteria
Pseudoalteromonas denitrificans DSM 6059 [FOLO]
25543
25617
+
Gln
TTG
[ENA]
¡û
>W1710558109
FOLO01000074
Gammaproteobacteria
Pseudoalteromonas denitrificans DSM 6059 [FOLO]
9789
9863
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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