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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342873 (57 seq.)
>W1711187734
LWPS01000096
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
490130
490056
-
Gln
CTG
[ENA]
¡û
>W131001730
AGYK01000001
Bacillota
Clostridium butyricum 60E.3 [AGYK]
441033
441107
+
Gln
CTG
[ENA]
¡û
>W131110772
APKZ01000034
Bacillota
Clostridium butyricum DKU-01 [APKZ]
20222
20148
-
Gln
CTG
[ENA]
¡û
>W131156810
AQQF01000044
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
14689
14763
+
Gln
CTG
[ENA]
¡û
>W131232802
AUJN01000026
Bacillota
Clostridium butyricum AGR2140 [AUJN]
24312
24238
-
Gln
CTG
[ENA]
¡û
>C171021725
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
1395825
1395899
+
Gln
CTG
-
¡û
>C171047582
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
1079511
1079585
+
Gln
CTG
-
¡û
>WENV180279164
OBHX01019423
[OBHX] metagenome; feces
107
33
-
Gln
CTG
[ENA]
¢þ
>WENV180333544
OBLF01001086
[OBLF] metagenome; feces
20021
20095
+
Gln
CTG
[ENA]
¢þ
>WENV180349020
OBLO01019177
[OBLO] metagenome; feces
2129
2203
+
Gln
CTG
[ENA]
¢þ
>W08001319
ABDT01000054
Bacillota
Clostridium butyricum 5521 [ABDT]
55821
55750
-
Gln
CTG
[ENA]
¡û
>WENV181555113
OGIT01000026
[OGIT] metagenome; Human gut stool
74241
74315
+
Gln
CTG
[ENA]
¢þ
>WENV181798305
OGRV01000018
[OGRV] human gut metagenome; fecal sample 3 from infant 4
83214
83288
+
Gln
CTG
[ENA]
¢þ
>WENV181798847
OGRX01000542
[OGRX] human gut metagenome; fecal sample 2 from infant 8
8907
8833
-
Gln
CTG
[ENA]
¢þ
>WENV181801507
OGSB01000421
[OGSB] human gut metagenome; fecal sample 5 from infant 3
14662
14736
+
Gln
CTG
[ENA]
¢þ
>WENV181801946
OGSC01000472
[OGSC] human gut metagenome; fecal sample 8 from infant 5
3863
3937
+
Gln
CTG
[ENA]
¢þ
>WENV181805099
OGSH01000645
[OGSH] human gut metagenome; fecal sample 5 from infant 6
8924
8850
-
Gln
CTG
[ENA]
¢þ
>WENV181805401
OGSI01000442
[OGSI] human gut metagenome; fecal sample 4 from infant 8
8465
8391
-
Gln
CTG
[ENA]
¢þ
>WENV181805816
OGSJ01000628
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
3853
3927
+
Gln
CTG
[ENA]
¢þ
>WENV181807829
OGSQ01000318
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
14590
14516
-
Gln
CTG
[ENA]
¢þ
>WENV181809365
OGST01000025
[OGST] human gut metagenome; fecal sample 7 from infant 6
136771
136845
+
Gln
CTG
[ENA]
¢þ
>WENV181810610
OGSV01000395
[OGSV] human gut metagenome; fecal sample 4 from infant 3
3776
3850
+
Gln
CTG
[ENA]
¢þ
>WENV181811022
OGSX01002092
[OGSX] human gut metagenome; fecal sample 1 from infant 8
37
111
+
Gln
CTG
[ENA]
¢þ
>WENV181811279
OGSY01000513
[OGSY] human gut metagenome; fecal sample 5 from infant 8
3844
3918
+
Gln
CTG
[ENA]
¢þ
>WENV181811650
OGSZ01000216
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
14702
14628
-
Gln
CTG
[ENA]
¢þ
>WENV181813790
OGTD01001041
[OGTD] human gut metagenome; fecal sample 1 from infant 3
300
226
-
Gln
CTG
[ENA]
¢þ
>WENV181814371
OGTG01000061
[OGTG] human gut metagenome; fecal sample 1 from infant 4
83214
83288
+
Gln
CTG
[ENA]
¢þ
>WENV181815046
OGTI01000194
[OGTI] human gut metagenome; fecal sample 5 from infant 1
3469
3543
+
Gln
CTG
[ENA]
¢þ
>WENV181817507
OGTN01000312
[OGTN] human gut metagenome; fecal sample 5 from infant 4
8519
8593
+
Gln
CTG
[ENA]
¢þ
>WENV181818224
OGTS01000039
[OGTS] human gut metagenome; fecal sample 4 from infant 4
14648
14574
-
Gln
CTG
[ENA]
¢þ
>WENV181818643
OGTT01000756
[OGTT] human gut metagenome; fecal sample 6 from infant 8
3583
3509
-
Gln
CTG
[ENA]
¢þ
>WENV181818904
OGTU01000163
[OGTU] human gut metagenome; fecal sample 6 from infant 4
8501
8575
+
Gln
CTG
[ENA]
¢þ
>WENV181822984
OGUH01001272
[OGUH] human gut metagenome; fecal sample 3 from infant 3
2343
2269
-
Gln
CTG
[ENA]
¢þ
>W141206257
AZLX01000197
Bacillota
Clostridium butyricum DORA_1 [AZLX]
26199
26273
+
Gln
CTG
[ENA]
¡û
>W141259002
CBYK010000004
Bacillota
Clostridium butyricum [CBYK]
360913
360839
-
Gln
CTG
[ENA]
¡û
>WENV182826952
OKCW01000320
[OKCW] human gut metagenome; human gut
288
214
-
Gln
CTG
[ENA]
¢þ
>WENV182952915
OKVX01000601
[OKVX] human gut metagenome; human gut
9100
9026
-
Gln
CTG
[ENA]
¢þ
>WENV183780996
PPYF01189886
[PPYF] human gut metagenome; stool from patient with Crohn's disease
228
302
+
Gln
CTG
[ENA]
¢þ
>C191171194
CP039702
Bacillota
Clostridium butyricum [CP039702]
1137287
1137361
+
Gln
CTG
-
¡û
>C191171341
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
848069
847995
-
Gln
CTG
-
¡û
>W09132867
ACOM01000005
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
2055547
2055473
-
Gln
CTG
[ENA]
¡û
>W1910637959
LRDH01000024
Bacillota
Clostridium butyricum 300064 [LRDH]
88196
88270
+
Gln
CTG
[ENA]
¡û
>W1810250550
PQCS01000117
Bacillota
Clostridium sp. 3-3 [PQCS]
9102
9028
-
Gln
CTG
[ENA]
¡û
>W1810805934
QRUG01000005
Bacillota
Clostridium butyricum AF25-25 [QRUG]
88107
88033
-
Gln
CTG
[ENA]
¡û
>W1511350214
JRMA01000012
Bacillota
Clostridium butyricum INCQS635 [JRMA]
22308
22234
-
Gln
CTG
[ENA]
¡û
>W1511365591
JSEG01000012
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
32149
32075
-
Gln
CTG
[ENA]
¡û
>W1511501358
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
876936
877010
+
Gln
CTG
[ENA]
¡û
>W1511554744
JZWE01000003
Bacillota
Clostridium sp. IBUN22A [JZWE]
19526
19600
+
Gln
CTG
[ENA]
¡û
>W1511554858
JZWF01000071
Bacillota
Clostridium sp. IBUN125C [JZWF]
427609
427535
-
Gln
CTG
[ENA]
¡û
>W1511554901
JZWG01000165
Bacillota
Clostridium sp. IBUN13A [JZWG]
48699
48625
-
Gln
CTG
[ENA]
¡û
>W1511554926
JZWH01000021
Bacillota
Clostridium sp. IBUN62F [JZWH]
2409
2335
-
Gln
CTG
[ENA]
¡û
>C161054161
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
1389306
1389380
+
Gln
CTG
-
¡û
>C161055914
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
1075892
1075966
+
Gln
CTG
-
¡û
>C161076428
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
1061601
1061675
+
Gln
CTG
-
¡û
>W1610020620
ASPQ01000025
Bacillota
Clostridium butyricum CWBI1009 [ASPQ]
82544
82618
+
Gln
CTG
[ENA]
¡û
>W1610627661
LIDW01000028
Bacillota
Clostridium butyricum [LIDW]
49988
49914
-
Gln
CTG
[ENA]
¡û
>W1710758788
LIDW01000028
Bacillota
Clostridium butyricum [LIDW]
49988
49914
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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