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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343013 (27 seq.)
>W1711504930
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
501414
501340
-
Glu
TTC
[ENA]
¡û
>W131166482
ARCM01000004
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
801137
801063
-
Glu
TTC
[ENA]
¡û
>W131175672
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
1424876
1424950
+
Glu
TTC
[ENA]
¡û
>w015394
AAPC01000001
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
4612
4536
-
Glu
TTC
[ENA]
¡û
>WENV180016837
FSVW01004111
[FSVW] metagenome; soil
1589
1663
+
Glu
TTC
[ENA]
¢þ
>WENV180020345
FTCZ01001846
[FTCZ] metagenome; soil
195
121
-
Glu
TTC
[ENA]
¢þ
>WENV181308062
OFIS01000171
[OFIS] sludge metagenome; sludge
17605
17679
+
Glu
TTC
[ENA]
¢þ
>WENV181311300
OFJB01000659
[OFJB] sludge metagenome; sludge
3
77
+
Glu
TTC
[ENA]
¢þ
>WENV181311779
OFJB01011858
[OFJB] sludge metagenome; sludge
2232
2306
+
Glu
TTC
[ENA]
¢þ
>WENV181311922
OFJB01022910
[OFJB] sludge metagenome; sludge
1479
1405
-
Glu
TTC
[ENA]
¢þ
>WENV181402171
OFTY01000184
[OFTY] sludge metagenome; sludge
48456
48382
-
Glu
TTC
[ENA]
¢þ
>W141151361
AXBA01000001
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
296159
296233
+
Glu
TTC
[ENA]
¡û
>C08011461
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
4619849
4619778
-
Glu
TTC
[Ensembl]
¡û
>C08000335
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
2235680
2235609
-
Glu
TTC
[Ensembl]
¡û
>W141278509
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
2666281
2666207
-
Glu
TTC
[ENA]
¡û
>WENV170706276
LNAP01001821
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8332
8406
+
Glu
TTC
[ENA]
¢þ
>WENV170707360
LNAP01018615
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4098
4024
-
Glu
TTC
[ENA]
¢þ
>W141730069
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
4692576
4692650
+
Glu
TTC
[ENA]
¡û
>W141733764
JNLC01000017
Alphaproteobacteria
Bosea sp. 117 [JNLC]
295084
295158
+
Glu
TTC
[ENA]
¡û
>W141814311
JQGB01000022
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
147544
147618
+
Glu
TTC
[ENA]
¡û
>W1810273161
PSNV01000004
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
103388
103462
+
Glu
TTC
[ENA]
¡û
>C151079159
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
1230922
1230996
+
Glu
TTC
[Ensembl]
¡û
>W10110066
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
372643
372717
+
Glu
TTC
[ENA]
¡û
>C10112218
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
1668060
1667986
-
Glu
TTC
[Ensembl]
¡û
>W11112503
ADBQ01000003
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
372643
372717
+
Glu
TTC
[ENA]
¡û
>C161047976
CP012945
Alphaproteobacteria
Devosia sp. A16 [CP012945]
4168726
4168652
-
Glu
TTC
-
¡û
>W1710505290
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
1086631
1086705
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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