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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343025 (55 seq.)
>W1711005323
LQNM01000025
Bacillota
Pediococcus pentosaceus [LQNM]
10598
10524
-
Gln
TTG
[ENA]
¡û
>W1711068925
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
286701
286627
-
Gln
TTG
[ENA]
¡û
>C171034283
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
1130001
1130073
+
Gln
TTG
-
¡û
>C171034340
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
1129997
1130069
+
Gln
TTG
-
¡û
>C171119448
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
332135
332209
+
Gln
TTG
-
¡û
>C171126466
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
324578
324652
+
Gln
TTG
-
¡û
>C017436
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1499497
1499426
-
Gln
TTG
[Ensembl]
¡û
>WENV180279341
OBHX01029955
[OBHX] metagenome; feces
974
1048
+
Gln
TTG
[ENA]
¢þ
>WENV180334077
OBLF01004579
[OBLF] metagenome; feces
5841
5767
-
Gln
TTG
[ENA]
¢þ
>WENV180349213
OBLO01028228
[OBLO] metagenome; feces
997
1071
+
Gln
TTG
[ENA]
¢þ
>W141241997
CAHU01000028
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
3276
3350
+
Gln
TTG
[ENA]
¡û
>WENV183769022
PPYE01412250
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1285
1359
+
Gln
TTG
[ENA]
¢þ
>WENV183790262
PPYF01411155
[PPYF] human gut metagenome; stool from patient with Crohn's disease
292620
292546
-
Gln
TTG
[ENA]
¢þ
>W141402975
JDVW01000008
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
292647
292573
-
Gln
TTG
[ENA]
¡û
>WENV170659506
JXWR01007608
[JXWR] soil metagenome; rice field; ambient CO2
3378
3452
+
Gln
TTG
[ENA]
¢þ
>C181042795
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
753935
753861
-
Gln
TTG
-
¡û
>C191023247
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1426340
1426266
-
Gln
TTG
-
¡û
>C191035499
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
429187
429260
+
Gln
TTG
-
¡û
>C191035529
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
1596396
1596323
-
Gln
TTG
-
¡û
>C191092791
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
204333
204405
+
Gln
TTG
-
¡û
>C191092847
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
1523058
1522985
-
Gln
TTG
-
¡û
>W09101476
AAEV01000012
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
35224
35150
-
Gln
TTG
[ENA]
¡û
>W1910176875
BJDI01000004
Bacillota
Lactiplantibacillus nangangensis 381-7 [BJDI]
210150
210077
-
Gln
TTG
[ENA]
¡û
>W1910177107
BJDM01000016
Bacillota
Paucilactobacillus kaifaensis 778-3 [BJDM]
3164
3237
+
Gln
TTG
[ENA]
¡û
>W1910184440
BJOQ01000015
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
55062
54989
-
Gln
TTG
[ENA]
¡û
>W1910184458
BJOQ01000075
Bacillota
Latilactobacillus curvatus NBRC 15884 [BJOQ]
398
325
-
Gln
TTG
[ENA]
¡û
>C141009505
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1463842
1463768
-
Gln
TTG
[Ensembl]
¡û
>W1911631287
PUFB01000016
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
3513
3587
+
Gln
TTG
[ENA]
¡û
>W1911632112
PUFO01000056
Bacillota
Secundilactobacillus malefermentans ATCC 49373 [PUFO]
20195
20122
-
Gln
TTG
[ENA]
¡û
>W1911632114
PUFO01000056
Bacillota
Secundilactobacillus malefermentans ATCC 49373 [PUFO]
19955
19882
-
Gln
TTG
[ENA]
¡û
>W1810000832
BEWQ01000004
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
3278
3352
+
Gln
TTG
[ENA]
¡û
>C151003016
AP014680
Bacillota
Paucilactobacillus hokkaidonensis JCM 18461 LOOC260 [AP014680]
446899
446972
+
Gln
TTG
[Ensembl]
¡û
>W11184806
BACN01000071
Bacillota
Secundilactobacillus malefermentans KCTC 3548 [BACN]
2951
3024
+
Gln
TTG
[ENA]
¡û
>W11184808
BACN01000071
Bacillota
Secundilactobacillus malefermentans KCTC 3548 [BACN]
3191
3264
+
Gln
TTG
[ENA]
¡û
>C121006600
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
290895
290967
+
Gln
TTG
[Ensembl]
¡û
>C161092315
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
572674
572748
+
Gln
TTG
[Ensembl]
¡û
>W1610029112
AWTT01000010
Bacillota
Paucilactobacillus wasatchensis [AWTT]
2995
3068
+
Gln
TTG
[ENA]
¡û
>W1610037888
AZGJ01000035
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
18483
18410
-
Gln
TTG
[ENA]
¡û
>W1610044970
BBAY01000032
Bacillota
Paucilactobacillus hokkaidonensis JCM 18461 [BBAY]
3053
3126
+
Gln
TTG
[ENA]
¡û
>W1610057809
BBZC01000019
Bacillota
Pediococcus pentosaceus [BBZC]
89511
89437
-
Gln
TTG
[ENA]
¡û
>W1610528236
JQBB01000001
Bacillota
Pediococcus claussenii [JQBB]
3788
3860
+
Gln
TTG
[ENA]
¡û
>W1610528406
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
3388
3462
+
Gln
TTG
[ENA]
¡û
>W1610529703
JQCH01000001
Bacillota
Paucilactobacillus hokkaidonensis [JQCH]
201580
201507
-
Gln
TTG
[ENA]
¡û
>W1610530179
JQCQ01000058
Bacillota
Pediococcus argentinicus [JQCQ]
3331
3405
+
Gln
TTG
[ENA]
¡û
>W1610650103
LJIU01000008
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
149292
149218
-
Gln
TTG
[ENA]
¡û
>W1610855973
LQNM01000025
Bacillota
Pediococcus pentosaceus [LQNM]
10598
10524
-
Gln
TTG
[ENA]
¡û
>W1610909495
LSFE01000001
Bacillota
Pediococcus pentosaceus [LSFE]
286701
286627
-
Gln
TTG
[ENA]
¡û
>W1710026482
AWTT01000010
Bacillota
Paucilactobacillus wasatchensis [AWTT]
2995
3068
+
Gln
TTG
[ENA]
¡û
>W1710034927
AZGJ01000035
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
18483
18410
-
Gln
TTG
[ENA]
¡û
>W1710042068
BBAY01000032
Bacillota
Paucilactobacillus hokkaidonensis JCM 18461 [BBAY]
3053
3126
+
Gln
TTG
[ENA]
¡û
>W1710054508
BBZC01000019
Bacillota
Pediococcus pentosaceus [BBZC]
89511
89437
-
Gln
TTG
[ENA]
¡û
>W1710629826
JQBB01000001
Bacillota
Pediococcus claussenii [JQBB]
3788
3860
+
Gln
TTG
[ENA]
¡û
>W1710629996
JQBF01000003
Bacillota
Pediococcus pentosaceus [JQBF]
3388
3462
+
Gln
TTG
[ENA]
¡û
>W1710631293
JQCH01000001
Bacillota
Paucilactobacillus hokkaidonensis [JQCH]
201580
201507
-
Gln
TTG
[ENA]
¡û
>W1710631769
JQCQ01000058
Bacillota
Pediococcus argentinicus [JQCQ]
3331
3405
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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